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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttccgatgattccatatagtcatcacgtgaaccaaatgcgctataaaggaacccaaaaaacaactgctgatacggctttactttcaataattttgcagCTAACTGGAGCAAAAATTGGTAACCGCCTGATGGCAGAGGCAGAAACGAATTTGGCTATTAATGTTCTCCCTGGACCATTATCAGAATCTTATGAAGTTC

Basic information

species Zea mays
transcript GRMZM2G128688_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128688_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g54910.1 (Oryza sativa), 3'ss of exon 8
ggttccgatgattccatatagtcatcacgtgaaccaaatgcgctataaaggaacccaaaaaacaactgctgatacggcttt------actttcaataattttgcagCTAACTGGAGCAAAAATTGGTAACCGCCTGATGGCAGAGGCAGAAACGAATTTGGCTATTAATGTTCTCCCTGGACCATTATCAGAATCTTATGAAGTTC
       |  | ||  ||| ||  |   || |   ||||  | |||  |  ||  |||  || ||  ||||       |||       |  || | ||||||| ||||||||||||| ||||| || |||||||| |||||||| |||||||||||  |||| ||||||||||| |||||||||||||||||||||||||||||||
-----ttaccaatctgtatggtgctatagtaatataaatttg-tattcaataaatcaagcaataatagctgccctctttttctgaggtccatctaaaattttgtagCTAACTGGAGCGAAAATAGGCAACCGCCTAATGGCAGAAGCAGAAACGAACCTGGCAATTAATGTTCTTCCTGGACCATTATCAGAATCTTATGAAGTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211333808|gb|FL249504.1|FL249504
EST:     TGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCAT                         CTAACTGGAGCAAAAATTGGTAACCGCCTGATGGCAGAGGCAGAAACGAAT
genomic: TGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCATgtaagtacca ... aattttgcagCTAACTGGAGCAAAAATTGGTAACCGCCTGATGGCAGAGGCAGAAACGAAT
EST: gi|211333809|gb|FL249505.1|FL249505
EST:     TGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCAT                         CTAACTGGAGCAAAAATTGGTAACCGCCTGATGGCAGAGGCAGAAACGAAT
genomic: TGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCATgtaagtacca ... aattttgcagCTAACTGGAGCAAAAATTGGTAACCGCCTGATGGCAGAGGCAGAAACGAAT
EST: gi|32802027|gb|CD954263.1|CD954263
EST:     TGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCAT                         CTAACTGGAGCAAAAATTGGTAACCGCCTGATGGCAGAGGCAGAAACGAAT
genomic: TGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCATgtaagtacca ... aattttgcagCTAACTGGAGCAAAAATTGGTAACCGCCTGATGGCAGAGGCAGAAACGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaggaacccaaaaaacaactgctgatacggctttactttcaataattttgcagCTAACTGGAGCAAAAATTGGTAACCGCCTGATGGCAGAGGCAGAAACGAATTTGGCTATTAATGTTCTCCCTGGACCATTATCAGAATCTTATGAAGTTC
                     tgctgat  putative branch site (score: 3)
                                 tttactttcaataatt  TA-rich tract