Sequence
atgc intronic sequence ATGC exonic sequencegtatatccattagacacattttttcaatagtattgttctatgccactcaacgttatatgttattccactttttgtttagGTGCGCATCAGATAATGACTTTACTGGGAAAATACCAGATTACATTGGAAGCTGGAGTAATTTAACAGATTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G126858_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os04g52630.1 (Oryza sativa), 3'ss of exon 6
--gtatatccattagacacattttt-tcaatagtattgttctatgccactcaacgttatatgt----tattccactttttgtttagGTGCGCATCAGATAATGACTTTACTGGGAAAATACCAGATTACATTGGAAGCTGGAGTAATTTAACAGATTT
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gtaggcctctaatatacgtattcttattgaaattaatctcccataccattaaatcttatgggttgtatatccttttcgttgtttagGTGGGCATCAGATAATAATTTTACTGGGAAAATACCAGATTATATCGGGAGCTGGA---ATTTAACAGACTT
upper sequence: GRMZM2G126858_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os04g52606.2 (Oryza sativa), 3'ss of exon 6
gtatatccatt---agacacattttttcaatagtattgttctatgccactcaacgttatatgt-tattccactttttgtttagGTGCGCATCAGATAATGACTTTACTGGGAAAATACCAGATTACATTGGAAGCTGGAGTAATTTAACAGATTT
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gtatagacctttcaaaagacatgttcttgttgacattaatgtcag--attccatgatatctgtgtatccttttacttgttcagGTGGGCATCGGATAATAATTTTACTGGACAAATACCAGATTACATTGGGAGCTGGA---ATTTAACAGACCT
upper sequence: GRMZM2G126858_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os04g52614.1 (Oryza sativa), 3'ss of exon 7
gtatatccattagaca----cattttttcaatagtattgttctatgccactcaacgttatatgttat---tccactt-tttgtttagGTGCGCATCAGATAATGACTTTACTGGGAAAATACCAGATTACATTGGAAGCTGGAGTAATTTAACAGATTT
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gtacgactacaaaaaaatgtcttcttgttggcattaatgttccatgccattaaaaattgtttcttatatgtccttttatttgttcagGTGGGCATCAGATAACAATTTTACTGGACAAATACCAGATTATATTGGGAGCTGGA---ATTTGACAGACCT
upper sequence: GRMZM2G126858_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os04g52600.1 (Oryza sativa), 3'ss of exon 7
---gtatatccattagacacattttt--tcaatagta-ttgttctatgccactcaacgttatatgttattccactttttgtttagGTGCGCATCAGATAATGACTTTACTGGGAAAATACCAGATTACATTGGAAGCTGGAGTAATTTAACAGATTT
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gtaggattacaaaaggatgtgtttcttgttgacattaattcttccgtgccattaaacattgtttcttatcctcctatttcttcagGTGGGCATCAGATAATGATTTTACTGGACAAATACCAGATTATATCGGGAACTGGA---ATTTGACAGACCT
upper sequence: GRMZM2G126858_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os04g52640.3 (Oryza sativa), 3'ss of exon 7
gtatatccattagacacatttttt-----caatagtattgttctatgcca----ctcaacgttatatgttattccactt-tttgtttagGTGCGCATCAGATAATGACTTTACTGGGAAAATACCAGATTACATTGGAAGCTGGAGTAATTTAACAGATTT
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gtataaacttacaaaatatttggtatagctgacattaatgttccattccataaattaaatcttatgtcctgtatcttttacttgttcagGTGGGCATCGGATAATAATTTTACTGGGCAAATACCGGATTATATTGGGAGCTGGA---ATTTAACAGACCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caatagtattgttctatgccactcaacgttatatgttattccactttttgtttagGTGCGCATCAGATAATGACTTTACTGGGAAAATACCAGATTACATTGGAAGCTGGAGTAATTTAACAGATTT
ttccactttttgttt CT-rich tract
ttatatgttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatatccattagacacattttttcaatagtattgttctatgccactcaacgttatatgttattccactttttgtttagGTGCGCATCAGATAATGACTTTACTGGGAAAATACCAGATTACATTGGAAGCTGGAGTAATTTAACAGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA