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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattattattttgacaaatttaatgtcgaaatctttgttgtatatgctgctttatttgactcctattgttcacttatcatgttttgaatagTCTGCCAAAGAAGAGGTTGCATCAGCAATGGACCAGCTAAAGGAGGCAGAGTCTGAAACGAAGGCTCTCCGATCTATGACTCAGAGAACGGTCTTAACTC

Basic information

species Zea mays
transcript GRMZM2G126266_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126266_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g70320.1 (Oryza sativa), 3'ss of exon 8
gtaattattattttgacaaatttaa-tgtcgaaat--ctttg--ttgtatatgctgctttatttgactcctattgttcacttatcatgttttgaatagTCTGCCAAAGAAGAGGTTGCATCAGCAATGGACCAGCTAAAGGAGGCAGAGTCTGAAACGAAGGCTCTCCGATCTATGACTCAGAGAACGGTCTTAACTC
|||| |||  ||   || |||  || | | ||| |    |||  ||||||||| || ||||||||||      ||||  ||| ||||| |||||||||| ||||||||||||||||| | |||| ||||| ||||||||||| |||||| ||||||| ||||| ||||| || ||||||||||||| | ||||||| |
gtaaatatacttcctaccaatcaaaatatggaagtagtgttggtttgtatatggtgttttatttgacca----tgttttcttctcatgctttgaatagTGTGCCAAAGAAGAGGTTGTAACAGCTATGGAGCAGCTAAAGGAAGCAGAGACTGAAACAAAGGCCCTCCGGTCCATGACTCAGAGAATGATCTTAACCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86469940|gb|DY236310.1|DY236310
EST:     CAAAGGATGGCAGAGATGGGGAAGTAACAACACTAAGGCAAGAACTTGAG                         TCTGCCAAAGAAGAGGTTGCATCAGCAATGGACCAGCTAAAGGAGGCAGAG
genomic: CAAAGGATGGCAGAGATGGGGAAGTAACAACACTAAGGCAAGAACTTGAGgtaattatta ... ttttgaatagTCTGCCAAAGAAGAGGTTGCATCAGCAATGGACCAGCTAAAGGAGGCAGAG
EST: gi|211421443|gb|FL301679.1|FL301679
EST:     CAAAGGATGGCAGAGATGGGGAAGTAACAACACTAAGGCAAGAACTTGAG                         TCTGCCAAAGAAGAGGTTGCATCAGCAATGGACCAGCTAAAGGAGGCAGAG
genomic: CAAAGGATGGCAGAGATGGGGAAGTAACAACACTAAGGCAAGAACTTGAGgtaattatta ... ttttgaatagTCTGCCAAAGAAGAGGTTGCATCAGCAATGGACCAGCTAAAGGAGGCAGAG
EST: gi|211421445|gb|FL301681.1|FL301681
EST:     CAAAGGATGGCAGAGATGGGGAAGTAACAACACTAAGGCAAGAACTTGAG                         TCTGCCAAAGAAGAGGTTGCATCAGCAATGGACCAGCTAAA
genomic: CAAAGGATGGCAGAGATGGGGAAGTAACAACACTAAGGCAAGAACTTGAGgtaattatta ... ttttgaatagTCTGCCAAAGAAGAGGTTGCATCAGCAATGGACCAGCTAAA
EST: gi|211421444|gb|FL301680.1|FL301680
EST:     CAAAGGATGGCAGAGATGGGGAAGTAACAACACTAAGGCAAGAACTTGAG                         TCTGCCAAAGAAGAGGTTGCATCAGCAATGGACCAGCTAAAGGAGGCAGAG
genomic: CAAAGGATGGCAGAGATGGGGAAGTAACAACACTAAGGCAAGAACTTGAGgtaattatta ... ttttgaatagTCTGCCAAAGAAGAGGTTGCATCAGCAATGGACCAGCTAAAGGAGGCAGAG
EST: gi|211120827|gb|FL155530.1|FL155530
EST:     CAAAGGATGGCAGAGATGGGGAAGTAACAACACTAAGGCAAGAACTTGAG                         TCTGCCAAAGAAGAGGTTGCATCAGCAATGGACCAGCTAAAGGAGGCAGAG
genomic: CAAAGGATGGCAGAGATGGGGAAGTAACAACACTAAGGCAAGAACTTGAGgtaattatta ... ttttgaatagTCTGCCAAAGAAGAGGTTGCATCAGCAATGGACCAGCTAAAGGAGGCAGAG
EST: gi|211421446|gb|FL301682.1|FL301682
EST:     CAAAGGATGGCAGAGATGGGGAAGTAACAACACTAAGGCAAGAACTTGAG                         TCTGCCAAAGAAGAGGTTGCATCAGCAATGGACCAGCTAAAGGAGGCAGAG
genomic: CAAAGGATGGCAGAGATGGGGAAGTAACAACACTAAGGCAAGAACTTGAGgtaattatta ... ttttgaatagTCTGCCAAAGAAGAGGTTGCATCAGCAATGGACCAGCTAAAGGAGGCAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtatatgctgctttatttgactcctattgttcacttatcatgttttgaatagTCTGCCAAAGAAGAGGTTGCATCAGCAATGGACCAGCTAAAGGAGGCAGAGTCTGAAACGAAGGCTCTCCGATCTATGACTCAGAGAACGGTCTTAACTC
                 atttgac  putative branch site (score: 4)
              tttatttga  TA-rich tract