1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaataactccccttccccttggcaatcgtcttcctggtcgggaaagcactctgctgtgccaaagcatggctaacatttacagtttttagGTGACGATGCCGTTCCTGGTCCTGCACGGCGGGGATGACGTCGTGACCGACCCTTCAGTCAGCAAGCTGCTATTCGAGAAGGCACCGAGCAAGGACAAAA
species | Zea mays |
transcript | GRMZM2G126083_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCCATGAGCTCCTGATGGTCAGCCTTGATATCGAGAAGAACTTGGATCAG GTGACGATGCCGTTCCTGGTCCTGCACGGCGGGGATGACGTCGTGACCGACEST: gi|32844428|gb|CD984109.1|CD984109
genomic: GCCATGAGCTCCTGATGGTCAGCCTTGATATCGAGAAGAACTTGGATCAGgtaataactc ... cagtttttagGTGACGATGCCGTTCCTGGTCCTGCACGGCGGGGATGACGTCGTGACCGAC
EST: GCCATGAGCTCCTGATGGTCAGCCTTGATATCGAGAAGAACTTGGATCAG GTGACGATGCCGTTCCTGGTCCTGCACGGCGGGGATGACGTCGTGACCGACEST: gi|32844633|gb|CD984314.1|CD984314
genomic: GCCATGAGCTCCTGATGGTCAGCCTTGATATCGAGAAGAACTTGGATCAGgtaataactc ... cagtttttagGTGACGATGCCGTTCCTGGTCCTGCACGGCGGGGATGACGTCGTGACCGAC
EST: GCCATGAGCTCCTGATGGTCAGCCTTGATATCGAGAAGAACTTGGATCAG GTGACGATGCCGTTCCTGGTCCTGCACGGCGGGGATGACGTCGTGACCGAC
genomic: GCCATGAGCTCCTGATGGTCAGCCTTGATATCGAGAAGAACTTGGATCAGgtaataactc ... cagtttttagGTGACGATGCCGTTCCTGGTCCTGCACGGCGGGGATGACGTCGTGACCGAC
tggtcgggaaagcactctgctgtgccaaagcatggctaacatttacagtttttagGTGACGATGCCGTTCCTGGTCCTGCACGGCGGGGATGACGTCGTGACCGACCCTTCAGTCAGCAAGCTGCTATTCGAGAAGGCACCGAGCAAGGACAAAA
ggctaac putative branch site (score: 18)
ttttt putative PPT
atttacagttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataactccccttccccttggcaatcgtcttcctggtcgggaaagcactctgctgtgccaaagcatggctaacatttacagtttttagGTGACGATGCCGTTCCTGGTCCTGCACGGCGGGGATGACGTCGTGACCGACCCTTCAGTCAGCAAGCTGCTATTCGAGAAGGCACCGAGCAAGGACAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG