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...aatgatgaaatgcaatctccaattttcaagaaatattttaagcttcactgttttgagctagctgagtgaaaaaaaaattgtttttgttgcctgtgtgtagTTTCCTTCTTTAACTTCTATGCAAGAAGCATTACCAAATCTGGGCAGTACCGCAGTGCTGTCGCGTGCTCCAG
species | Zea mays |
transcript | GRMZM2G126079_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCCTGTTAGCTTGGCAGGAGGGCCTGCATCGGCTCATGCCTCCACCAGG TTTCCTTCTTTAACTTCTATGCAAGAAGCATTACCAAATCTGGGCAGTCCCEST: gi|166522775|gb|EG239967.1|EG239967
genomic: ATCCTGTTAGCTTGGCAGGAGGGCCTGCATCGGCTCATGCCTCCACCAGGgtactgaaaa ... ctgtgtgtagTTTCCTTCTTTAACTTCTATGCAAGAAGCATTACCAAATCTGGGCAGTACC
EST: ATCCTGTTAGCTTGGCAGGAGGGCCTGCATCGGCTCATGCCTCCACCAGG TTTCCTTCTTTAACTTCTATGCAAGAAGCAEST: gi|74243473|gb|DT651387.1|DT651387
genomic: ATCCTGTTAGCTTGGCAGGAGGGCCTGCATCGGCTCATGCCTCCACCAGGgtactgaaaa ... ctgtgtgtagTTTCCTTCTTTAACTTCTATGCAAGAAGCA
EST: ATCCTGTTAGCTTGGCAGGAGGGCCTGCATCGGCTCATGCCTCCACCAGG TTTCCTTTTTTAACTTTTATGCAAGAAGCATTACCAAATTTGGGCAGTACCEST: gi|71298675|gb|DR785312.1|DR785312
genomic: ATCCTGTTAGCTTGGCAGGAGGGCCTGCATCGGCTCATGCCTCCACCAGGgtactgaaaa ... ctgtgtgtagTTTCCTTCTTTAACTTCTATGCAAGAAGCATTACCAAATCTGGGCAGTACC
EST: ATCCTGTTAGCTTGGCAGGAGGGCCTGCATCGGCTCATGCCTCCACCAGG TTTCCTTCTTTAACTTTTATGCAAGAAGCATTACCAAATTTGGGCAGTACC
genomic: ATCCTGTTAGCTTGGCAGGAGGGCCTGCATCGGCTCATGCCTCCACCAGGgtactgaaaa ... ctgtgtgtagTTTCCTTCTTTAACTTCTATGCAAGAAGCATTACCAAATCTGGGCAGTACC
cactgttttgagctagctgagtgaaaaaaaaattgtttttgttgcctgtgtgtagTTTCCTTCTTTAACTTCTATGCAAGAAGCATTACCAAATCTGGGCAGTACCGCAGTGCTGTCGCGTGCTCCAG
tgaaaaaaaaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgatgaaatgcaatctccaattttcaagaaatattttaagcttcactgttttgagctagctgagtgaaaaaaaaattgtttttgttgcctgtgtgtagTTTCCTTCTTTAACTTCTATGCAAGAAGCATTACCAAATCTGGGCAGTACCGCAGTGCTGTCGCGTGCTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- tgatgaa
- - - - - - - - - - - - - caagaaa
- - - - - - - - - - - - - - - - - - - - -gcttcac
- - - - - - - - - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa