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...gaactttacaggcagttttacccttgaaagcatcagaatttgtttttttttatcatcatagtgctagttcccttttatgtttatgttgtctgatctgtagGAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATAAACATGTAAATGAGTTGAGGGCTGCAGTCAATGCACATGCTGGTGATAA
species | Zea mays |
transcript | GRMZM2G125243_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATG GAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATAEST: gi|211164177|gb|FL132752.1|FL132752
genomic: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATGgtaatactac ... tgatctgtagGAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATA
EST: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATG GAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATAEST: gi|211164169|gb|FL132744.1|FL132744
genomic: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATGgtaatactac ... tgatctgtagGAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATA
EST: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATG GAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATAEST: gi|211164175|gb|FL132750.1|FL132750
genomic: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATGgtaatactac ... tgatctgtagGAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATA
EST: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATG GAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATAEST: gi|211164176|gb|FL132751.1|FL132751
genomic: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATGgtaatactac ... tgatctgtagGAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATA
EST: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATG GAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATAEST: gi|211164172|gb|FL132747.1|FL132747
genomic: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATGgtaatactac ... tgatctgtagGAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATA
EST: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATG GAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATAEST: gi|211164171|gb|FL132746.1|FL132746
genomic: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATGgtaatactac ... tgatctgtagGAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATA
EST: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATG GAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATAEST: gi|211164170|gb|FL132745.1|FL132745
genomic: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATGgtaatactac ... tgatctgtagGAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATA
EST: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATG GAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATAEST: gi|211164174|gb|FL132749.1|FL132749
genomic: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATGgtaatactac ... tgatctgtagGAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATA
EST: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATG GAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATA
genomic: TATTTTTATTTCGACATCAGGAGATCAACCTCAATCAACAAGTGGAAATGgtaatactac ... tgatctgtagGAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATA
ttttttatcatcatagtgctagttcccttttatgtttatgttgtctgatctgtagGAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATAAACATGTAAATGAGTTGAGGGCTGCAGTCAATGCACATGCTGGTGATAA
gtctgat putative branch site (score: 4)
ttttatgtttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaactttacaggcagttttacccttgaaagcatcagaatttgtttttttttatcatcatagtgctagttcccttttatgtttatgttgtctgatctgtagGAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAGGAGCACAATAAACATGTAAATGAGTTGAGGGCTGCAGTCAATGCACATGCTGGTGATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG