1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaagttggataagataaatctaaagcgaacatagcagttgttggtctgtactgttataatcagaaaagagtaaacacttccttgtgcaatgtctctgcagGTCAGGAAGCATCAGCCCCAGATGGCGCAAATACCGATCAAGTTCCAGGAGCCATGAAGCCGGTACTAGTTCCAGCCTTCCAGGAGCACTAGTGAGCGAA
species | Zea mays |
transcript | GRMZM2G124091_T04 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTCACGTTTATGTTGCCTCTCACAAGCTATTGTCGATGGCTGGTGTCAAG GTCAGGAAGCATCAGCCCCAGATGGCGCAAATACCGATCAAGTTCCAGGAGEST: gi|33101140|gb|CF061100.1|CF061100
genomic: CTCACGTTTATGTTGCCTCTCACAAGCTATTGTCGATGGCTGGTGTCAAGgtcctgaaaa ... gtctctgcagGTCAGGAAGCATCAGCCCCAGATGGCGCAAATACCGATCAAGTTCCAGGAG
EST: CTATTGTCGATGGCTGGTGTCAAG GTCAGGAAGCATCAGCCCCAGATGGCGCAAATACCGATCAAGTTCCAGGAGEST: gi|76920705|gb|DV168281.1|DV168281
genomic: CTATTGTCGATGGCTGGTGTCAAGgtcctgaaaa ... gtctctgcagGTCAGGAAGCATCAGCCCCAGATGGCGCAAATACCGATCAAGTTCCAGGAG
EST: CTCACGTTTATGTTGCCTCTCACAAGCTATTGTCGATGGCTGGTGTCAAG GTCAGGAAGCATCAGCCCCAGATGGCGCAAATACCGATCAAGTTCCAGGAGEST: gi|113694389|gb|DW847886.1|DW847886
genomic: CTCACGTTTATGTTGCCTCTCACAAGCTATTGTCGATGGCTGGTGTCAAGgtcctgaaaa ... gtctctgcagGTCAGGAAGCATCAGCCCCAGATGGCGCAAATACCGATCAAGTTCCAGGAG
EST: CTCTCACAAGCTATTGTCGATGGCTGGTGTCAAG GTCAGGAAGCATCAGCCCCAGATGGCGCAAATACCGATCAAGTTCCAGGAGEST: gi|76920706|gb|DV168282.1|DV168282
genomic: CTCTCACAAGCTATTGTCGATGGCTGGTGTCAAGgtcctgaaaa ... gtctctgcagGTCAGGAAGCATCAGCCCCAGATGGCGCAAATACCGATCAAGTTCCAGGAG
EST: CTCACGTTTATGTTGCCTCTCACAAGCTATTGTCGATGGCTGGTGTCAAG GTCAGGAAGCATCAGCCCCAGATGGCGCAAATACCGATCAAGTTCCAGGAG
genomic: CTCACGTTTATGTTGCCTCTCACAAGCTATTGTCGATGGCTGGTGTCAAGgtcctgaaaa ... gtctctgcagGTCAGGAAGCATCAGCCCCAGATGGCGCAAATACCGATCAAGTTCCAGGAG
ctgtactgttataatcagaaaagagtaaacacttccttgtgcaatgtctctgcagGTCAGGAAGCATCAGCCCCAGATGGCGCAAATACCGATCAAGTTCCAGGAGCCATGAAGCCGGTACTAGTTCCAGCCTTCCAGGAGCACTAGTGAGCGAA
tgtctct CT-rich tract
ttataatcagaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagttggataagataaatctaaagcgaacatagcagttgttggtctgtactgttataatcagaaaagagtaaacacttccttgtgcaatgtctctgcagGTCAGGAAGCATCAGCCCCAGATGGCGCAAATACCGATCAAGTTCCAGGAGCCATGAAGCCGGTACTAGTTCCAGCCTTCCAGGAGCACTAGTGAGCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA