1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacattaccaccactggaataaatttgtggacatcttacagtgctaaaccgttgcatattctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTCTCTTAGCTGGAGACTTCACCGCCAATGTCCAGCTGCTGCAACATTACC
species | Zea mays |
transcript | GRMZM2G122935_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGTGTGTACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTEST: gi|44900278|gb|CK826823.1|CK826823
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCCTCG GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTEST: gi|60339344|gb|DN206317.1|DN206317
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: TGTGTATACATATCTGGGATGCTATCCTGGGTGATCCAGAAGGCCCATCG GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTEST: gi|78110295|gb|DV528710.1|DV528710
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTEST: gi|74232771|gb|DT640685.1|DT640685
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTEST: gi|148981603|gb|EE027761.2|EE027761
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTEST: gi|76014384|gb|DT941554.1|DT941554
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTEST: gi|76011673|gb|DT938843.1|DT938843
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: TGTGTATACATATTTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTEST: gi|71425450|gb|DR806680.1|DR806680
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCTTCG GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTEST: gi|32928604|gb|CF033416.1|CF033416
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTEST: gi|31628335|gb|CD526557.1|CD526557
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTEST: gi|83278661|gb|DV942669.1|DV942669
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTEST: gi|38687663|gb|CK144694.1|CK144694
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTEST: gi|149089684|gb|EE178941.2|EE178941
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: TGTGTATACATATTTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTEST: gi|32928506|gb|CF033318.1|CF033318
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTEST: gi|74241509|gb|DT649423.1|DT649423
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTEST: gi|32928299|gb|CF033111.1|CF033111
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
EST: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCG GACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
genomic: TGTGTATACATATCTGGGATGCTATCTTGGGTGATCCAGAAGGCCCATCGgtacattacc ... tctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGT
tggaataaatttgtggacatcttacagtgctaaaccgttgcatattctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTCTCTTAGCTGGAGACTTCACCGCCAATGTCCAGCTGCTGCAACATTACC
ttctaat putative branch site (score: 2)
atattctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacattaccaccactggaataaatttgtggacatcttacagtgctaaaccgttgcatattctaatgcagGACACATTGATGAGGATATGCTGTGCCATGCTCATCCTAGTCCGAAAGCGTCTCTTAGCTGGAGACTTCACCGCCAATGTCCAGCTGCTGCAACATTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC