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gtcagtaccattttttgttactggatttctttgccttttccttgccgttttggatctttgaagtcttgtttaccagctattagtatgctggaatttttttaagtcactgtcctgtaagcctggcctccctcttcaaaaaagttctgttgattggtgaattttgttttgatctttcagGTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAACTTGCAGAGGATAGGCACTGGAGAGTCCGGCTTGCAATAATTGAGTACA
species | Zea mays |
transcript | GRMZM2G122135_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAG GTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAAEST: gi|31356310|gb|CD440667.1|CD440667
genomic: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAA
EST: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAG GTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAAEST: gi|211334572|gb|FL404959.1|FL404959
genomic: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAA
EST: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAG GTTATTGGCATTGACTTTTTATCCCAAACACTGSTACCAGCCATTGTAGAAEST: gi|116828872|gb|EC861659.1|EC861659
genomic: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAA
EST: TTCCAGATGTTCGGCTTAACATAATCAGCAAG-TTGATCAGGTTAATCAG GTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAAEST: gi|32914759|gb|CF019571.1|CF019571
genomic: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAA
EST: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAG GTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAAEST: gi|24763712|gb|CA398883.1|CA398883
genomic: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAA
EST: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAG GTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCEST: gi|31362520|gb|CD446877.1|CD446877
genomic: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGCATTGACTTTTTATCCCAAACACTGCTACC
EST: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAG GTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAAEST: gi|37393714|gb|CF634122.1|CF634122
genomic: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAA
EST: TTCCAGATGTTCGGGTTAACATAATCAGCAAGCTTGATCAGGTTTATCAG GTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAAEST: gi|211206781|gb|FL154157.1|FL154157
genomic: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAA
EST: TAATCAGCAAGCTTGATCAGGTTAATCAG GTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAAEST: gi|32849162|gb|CD988843.1|CD988843
genomic: TAATCAGCAAGCTTGATCAGGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAA
EST: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAG GTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAAEST: gi|40336631|gb|CK370701.1|CK370701
genomic: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAA
EST: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAG GTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAAEST: gi|32919959|gb|CF024771.1|CF024771
genomic: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAA
EST: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAG GTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAAEST: gi|32849378|gb|CD989059.1|CD989059
genomic: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAA
EST: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAG GTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAAEST: gi|31361222|gb|CD445579.1|CD445579
genomic: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAA
EST: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAG GTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAA
genomic: TTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTAATCAGgtcagtacca ... gatctttcagGTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAA
gcctccctcttcaaaaaagttctgttgattggtgaattttgttttgatctttcagGTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAACTTGCAGAGGATAGGCACTGGAGAGTCCGGCTTGCAATAATTGAGTACA
ttttgat putative branch site (score: 4)
tctttc CT-rich tract
aattttgttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtaccattttttgttactggatttctttgccttttccttgccgttttggatctttgaagtcttgtttaccagctattagtatgctggaatttttttaagtcactgtcctgtaagcctggcctccctcttcaaaaaagttctgttgattggtgaattttgttttgatctttcagGTTATTGGCATTGACTTTTTATCCCAAACACTGCTACCAGCCATTGTAGAACTTGCAGAGGATAGGCACTGGAGAGTCCGGCTTGCAATAATTGAGTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA