1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgtttgttttctgtcacatcctctttttagacatatttatcatgtctttactagacttcgtgtgaggccgcttttttcagAATGTAACGGACTTGACAGATTTAGTTAGCTCTGGAAGAAACAAAAATGAAGAAGAAAACTCTTTTATTCATGAGTATGAGCTGAAAGGCTTGGCTTTCC
species | Zea mays |
transcript | GRMZM2G121022_T04 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAATCACAAAGCCAGAAGAACTTGTTCGGCTATATGATCTGCTTATTCAG AATGTAACGGACTTGACAGATTTAGTTAGCTCTGGAAGAAACAAAAATGAAEST: gi|26457459|gb|CA829042.1|CA829042
genomic: GAACCACAAAGCCAGAAGAACTTGTTCGGCTATATGATCTGCTTATTCAGgtatgtttgt ... cttttttcagAATGTAACGGACTTGACAGATTTAGTTAGCTCTGGAAGAAACAAAAATGAA
EST: GAATCACAAAGCCAGAAGAACTTGTTCGGCTATATGATCTGCTTATTCAG AATGTAACGGACTTGACAGATTTAGTTAGCTCTGGAAGAAACAAAAATGAAEST: gi|76286955|gb|DV026523.1|DV026523
genomic: GAACCACAAAGCCAGAAGAACTTGTTCGGCTATATGATCTGCTTATTCAGgtatgtttgt ... cttttttcagAATGTAACGGACTTGACAGATTTAGTTAGCTCTGGAAGAAACAAAAATGAA
EST: GATCTGCTTATTCAG AATGTAACGGACTTGACAGATTTAGTTAGCTCTGGAAGAAACAAAAATGAAEST: gi|13177967|gb|BG349225.1|BG349225
genomic: GATCTGCTTATTCAGgtatgtttgt ... cttttttcagAATGTAACGGACTTGACAGATTTAGTTAGCTCTGGAAGAAACAAAAATGAA
EST: GAACCACAAAGCCAGAAGAACTTGTTCGGCTATATGATCTGCTTATTCAG AATGTAACGGACTTGACAGATTTAGTTAGCTCTGGAAGAAACAAAAATGAAEST: gi|22473330|gb|BU037810.1|BU037810
genomic: GAACCACAAAGCCAGAAGAACTTGTTCGGCTATATGATCTGCTTATTCAGgtatgtttgt ... cttttttcagAATGTAACGGACTTGACAGATTTAGTTAGCTCTGGAAGAAACAAAAATGAA
EST: GAATCACAAAGCCAGAAGAACTTGTTCGGCTATATGATCTGCTTATTCAG AATGTAACGGACTTGACAGATTTAGTTAGCTCTGGAAGAAACAAAAATGAAEST: gi|28568984|gb|CB280859.1|CB280859
genomic: GAACCACAAAGCCAGAAGAACTTGTTCGGCTATATGATCTGCTTATTCAGgtatgtttgt ... cttttttcagAATGTAACGGACTTGACAGATTTAGTTAGCTCTGGAAGAAACAAAAATGAA
EST: GAACCACAAAGCCAGAAGAACTTGTTCGGCTATATGATCTGCTTATTCAG AATGTAACGGACTTGACAGATTTAGTTAGCTCTGGAAGAAACAAAAATGAA
genomic: GAACCACAAAGCCAGAAGAACTTGTTCGGCTATATGATCTGCTTATTCAGgtatgtttgt ... cttttttcagAATGTAACGGACTTGACAGATTTAGTTAGCTCTGGAAGAAACAAAAATGAA
tttagacatatttatcatgtctttactagacttcgtgtgaggccgcttttttcagAATGTAACGGACTTGACAGATTTAGTTAGCTCTGGAAGAAACAAAAATGAAGAAGAAAACTCTTTTATTCATGAGTATGAGCTGAAAGGCTTGGCTTTCC
ccgcttttttc CT-rich tract
atatttatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttgttttctgtcacatcctctttttagacatatttatcatgtctttactagacttcgtgtgaggccgcttttttcagAATGTAACGGACTTGACAGATTTAGTTAGCTCTGGAAGAAACAAAAATGAAGAAGAAAACTCTTTTATTCATGAGTATGAGCTGAAAGGCTTGGCTTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA