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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcgataatattgaagaaaaaaaatctatgttgcttttgtttgtgagacatcttcaattcttcatggaccatcatgataactatgccttgcagACAGCAAGGAAAGTCACATCTTGGTGTGCTTGATTGTGATTCAGGTTCTATTTCATTGCTTGACATCCCTTTCTCTGATTTATCTGATGTG

Basic information

species Zea mays
transcript GRMZM2G120302_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120302_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os06g11180.1 (Oryza sativa), 3'ss of exon 8
gtatcgataatattgaagaaaaaaaatctatgttgcttttgtttgtgaga-catcttcaattcttcatggaccatcatgataactatgccttgcagACAGCAAGGAAAGTCACATCTTGGTGTGCTTGATTGTGATTCAGGTTCTATTTCATTGCTTGACATCCCTTTCTCTGATTTATCTGATGTG
     | |  ||||| |          || |  | ||| ||||  ||| |  || || ||   | |||    ||  ||    | |||| |   ||| ||||| |||| |||| |||||||||| || || | ||||  ||||||| ||||||||||||||| ||| ||| ||||||||||  |||||
-----gtttttattgta----------ctgttatacttctgttgatgaaaatatattaaaaattccat----cacaataccta-tatgtcacacagGCAGCATGGAAGGTCATATCTTGGTGTTCTGGACTCTGATATAGGTTCTGTTTCATTGCTTGACACCCCCTTCACTGATTTATCCAATGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgtgagacatcttcaattcttcatggaccatcatgataactatgccttgcagACAGCAAGGAAAGTCACATCTTGGTGTGCTTGATTGTGATTCAGGTTCTATTTCATTGCTTGACATCCCTTTCTCTGATTTATCTGATGTG
                                    tgataac  putative branch site (score: 2)
                                      ataactat  TA-rich tract