Sequence
atgc intronic sequence ATGC exonic sequencegtaagagatctgcatattgtttcatggatctgagtttgtgatataaactaattttatgactcatggaaggtcatgctcacttatattttacatgggttgctcacagGAACTTCCAAATCCTGTCTACCTTTTTCAAGGTATAGTTTTAAGAAGAGGTGCTAAAGGGACTGGCATGAAGTCCATAGAACTTGCCCTTTCCATGTGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G119791_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os11g36420.1 (Oryza sativa), 3'ss of exon 8
------------------------------------------------------------------------gtaagagatctgcatattgtttcatggatctgag---tttgtgatataaa--ctaattttatgactcatgga-----aggtcatgctcactta-tattttacatgggtt---gctcacagGAACTTCCAAATCCTGTCTACCTTTTTCAAGGTATAGTTTTAAGAAGAGGTGCTAAAGGGACTGGCATGAAGTCCATAGAACTTGCCCTTTCCATGTGTG
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gtaaaaggttatatgatcacatttttctttcgtccagctgagcatgttgtacaattcactatctgtctcttcttgaatcatactaatgt-gaagcatgaatttcatgctgttgtgattttcttcttgttactatggtttttggggactgaaatcattcacactgaatacttggcaattgttttaactggcagGAACTTCCAAACCCAGTTTATCTTTTTCAAGGCATAGTCTTGAGAAGAGGTGCTAAAGGGACTGGTATGAAGTCAATAGAATTGGCCCTTTCCATGTGTG
upper sequence: GRMZM2G119791_T03 (Zea mays), 3'ss of exon 6
lower sequence: Vv14s0068g01150.t01 (Vitis vinifera), 3'ss of exon 8
gtaagagatctgcatattgtttcatggatctgagtttgtgatataaactaattttatgactcatggaaggtcatgctcacttatattttacatgggttgctcacagGAACTTCCAAATCCTGTCTACCTTTTTCAAGGTATAGTTTTAAGAAGAGGTGCTAAAGGGACTGGCATGAAGTCCATAGAACTTGCCCTTTCCATGTGTG
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-cattctcttttcattctgctt---ggatttttatgtcttaattgaaacagt--aatccttcttgcaatggcatgattttgatgatttttttttcacttatttcagAGTATTCAAAATCCAGTTTATCTTTTCCAAGGTATTGTGCTTCGCAGAGGTGCCAAAGGAACTGGAATGAAATCTATAGAACTAGCACTTTCCATGTGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149084948|gb|EE174458.2|EE174458EST: CACTTATCATTAAAAGTTTGACGCACAAAGAAATCAATGCGGTGATAAAG GAACTTCCAAATCCTGTCTACCTTTTTNCA-GGTATAGTTTTAAGAAGAGG
genomic: CACTTATCATTAAAAGTTTGACGCACAAAGAAATCAATGCGGTGATAAAGgtaagagatc ... ttgctcacagGAACTTCCAAATCCTGTCTACCTTTTT-CAAGGTATAGTTTTAAGAAGAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttatgactcatggaaggtcatgctcacttatattttacatgggttgctcacagGAACTTCCAAATCCTGTCTACCTTTTTCAAGGTATAGTTTTAAGAAGAGGTGCTAAAGGGACTGGCATGAAGTCCATAGAACTTGCCCTTTCCATGTGTG
tgctcac putative branch site (score: 2)
acttatattttacat TA-rich tract