1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagatgggaatctatatatgtttttcaatacttaatgatgtaatttcttagtaacatgtttccttgttacacagAGTAACTGAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC
species | Zea mays |
transcript | GRMZM2G119725_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGACTAACATGGCAAATGACTAAACGGCGTGGTGACCAGGAAGTTCACAA AGTAACTGAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGEST: gi|149108357|gb|EE292695.2|EE292695
genomic: GGACTAACATGGCAAATGACTAAACGGCGTGGTGACCAGGAAGTTCACAAgtgagatggg ... tgttacacagAGTAACTGAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATG
EST: GGACTAACATGGCAAATGACTAAACGGCGTGGTGACCAGGAAGTTCACAA AGTAACTGAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATG
genomic: GGACTAACATGGCAAATGACTAAACGGCGTGGTGACCAGGAAGTTCACAAgtgagatggg ... tgttacacagAGTAACTGAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATG
gtttttcaatacttaatgatgtaatttcttagtaacatgtttccttgttacacagAGTAACTGAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC
tagtaac putative branch site (score: 1)
tttccttgtt putative PPT
ttaatgatgtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatgggaatctatatatgtttttcaatacttaatgatgtaatttcttagtaacatgtttccttgttacacagAGTAACTGAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATGTGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA