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...ttggcactattttgttacagatttttcatcttattatctgtgtctattcatcatgatgcaatgctagatacatactgatgattctttgtttaatttgtagACCGATCAAAAGTTGCGCCTCTGTGATATATGTGGAGCATTTCTGAGTGTATATGACAA
species | Zea mays |
transcript | GRMZM2G118014_T06 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGGAGCCACCTTCAGACCCTTCTAAATATACTGCCGCTGATGTTTGGATT ACCGATCAAAAGTTGCGCCTCTGTGATATATGTGGAGCATTTCTGAGTGTAEST: gi|60359397|gb|DN226370.1|DN226370
genomic: CGGAGCCACCTTCAGACCCTTCTAAATATACTGCCGCTGATGTTTGGATTgtgagattcc ... taatttgtagACCGATCAAAAGTTGCGCCTCTGTGATATATGTGGAGCATTTCTGAGTGTA
EST: CGGAGCCACCTTCAGACCCTTCTAAATATACTGCCGCTGATGTTTGGATT ACCGATCAAAAGTTGCGCCTCTGTGATATATGTGGAGCATTTCTGAGTGTAEST: gi|67019925|gb|CO448674.1|CO448674
genomic: CGGAGCCACCTTCAGACCCTTCTAAATATACTGCCGCTGATGTTTGGATTgtgagattcc ... taatttgtagACCGATCAAAAGTTGCGCCTCTGTGATATATGTGGAGCATTTCTGAGTGTA
EST: CGGAGCCACCTTCAGACCCTTCTAAATATACTGCCGCTGATGTTTGGATT ATCGATCAAAAGTTGCGCCTCTGTGATATATGTGGAGCATTTCTGAGTGTAEST: gi|60347948|gb|DN214921.1|DN214921
genomic: CGGAGCCACCTTCAGACCCTTCTAAATATACTGCCGCTGATGTTTGGATTgtgagattcc ... taatttgtagACCGATCAAAAGTTGCGCCTCTGTGATATATGTGGAGCATTTCTGAGTGTA
EST: CAGACCCTTCTAAATATACTGCCGCTGATGTTTGGATT ACCGATCAAAAGTTGCGCCTCTGTGATATATGTGGAGCATTTCTGAGTGTAEST: gi|71445995|gb|DR827045.1|DR827045
genomic: CAGACCCTTCTAAATATACTGCCGCTGATGTTTGGATTgtgagattcc ... taatttgtagACCGATCAAAAGTTGCGCCTCTGTGATATATGTGGAGCATTTCTGAGTGTA
EST: CGGAGCCACCTTCAGACCCTTCTAAATATACTGCCGCTGATGTTTGGATT ACCGATCAAAAGTTGCGCCTCTGTGATATATGTGGAGCATTTCTGAGTGTAEST: gi|60348227|gb|DN215200.1|DN215200
genomic: CGGAGCCACCTTCAGACCCTTCTAAATATACTGCCGCTGATGTTTGGATTgtgagattcc ... taatttgtagACCGATCAAAAGTTGCGCCTCTGTGATATATGTGGAGCATTTCTGAGTGTA
EST: CGGAGCCACCTTCAGACCCTTCTAAATATACTGCCGCTGATGTTTGGATT ACCGATCAAAAGTTGCGCCTCTGTGATATATGTGGAGCATTTCTGAGTGTAEST: gi|71445994|gb|DR827044.1|DR827044
genomic: CGGAGCCACCTTCAGACCCTTCTAAATATACTGCCGCTGATGTTTGGATTgtgagattcc ... taatttgtagACCGATCAAAAGTTGCGCCTCTGTGATATATGTGGAGCATTTCTGAGTGTA
EST: CGGAGCCACCTTCAGACCCTTCTAAATATACTGCCGCTGATGTTTGGATT ACCGATCAAAAGTTGCGCCTCTGTGATATATGTGGAGCATTTCTGAGTGTA
genomic: CGGAGCCACCTTCAGACCCTTCTAAATATACTGCCGCTGATGTTTGGATTgtgagattcc ... taatttgtagACCGATCAAAAGTTGCGCCTCTGTGATATATGTGGAGCATTTCTGAGTGTA
attcatcatgatgcaatgctagatacatactgatgattctttgtttaatttgtagACCGATCAAAAGTTGCGCCTCTGTGATATATGTGGAGCATTTCTGAGTGTATATGACAA
ttctttgttt CT-rich tract
attctttgtttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggcactattttgttacagatttttcatcttattatctgtgtctattcatcatgatgcaatgctagatacatactgatgattctttgtttaatttgtagACCGATCAAAAGTTGCGCCTCTGTGATATATGTGGAGCATTTCTGAGTGTATATGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA