1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttatatatatctaaacaacatgcagtataaataagttcgcaatacatattttttactctcttcattacccctgatgaatttctgatgagatgtgttgcagGCAACTAGTGGCAACCAAAACAACATGCTCATCCTGCAAGAGACCTGCACCGACCCGTCAGGCTCTCTGGTGGTGTACGCCCCGGTGGACGTGCAGTCCA
species | Zea mays |
transcript | GRMZM2G116658_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCGCCAAGGGCCAGCACCACGGCAACGCCGTCTCCCTCCTCCGCCCAAAT GCAACTAGTGGCAACCAAAACAACATGCTCATCCTGCAAGAGACCTGCACCEST: gi|31406121|gb|CD484853.1|CD484853
genomic: TCGCCAAGGGCCAGCACCACGGCAACGCCGTCTCCCTCCTCCGCCCAAATgtaagcacta ... tgtgttgcagGCAACTAGTGGCAACCAAAACAACATGCTCATCCTGCAAGAGACCTGCACC
EST: TCGCCAAGGGCCAGCACCACGGCAACGCCGTCTCCCTCCTCCGCCCAAAT GCAACTAGTGGCAACCAAAACAACATGCTCATCCTGCAAGAGACCTGCACCEST: gi|88756928|gb|DY541069.1|DY541069
genomic: TCGCCAAGGGCCAGCACCACGGCAACGCCGTCTCCCTCCTCCGCCCAAATgtaagcacta ... tgtgttgcagGCAACTAGTGGCAACCAAAACAACATGCTCATCCTGCAAGAGACCTGCACC
EST: TCGCCAAGGGCCAGCACCACGGCAACGCCGTCTCCCTCCTCCGCCCAAAT GCAACTAGTGGCAACCAAAACAACATGCTCATCCTGCAAGAGACCTGCACCEST: gi|28931242|gb|CB334603.1|CB334603
genomic: TCGCCAAGGGCCAGCACCACGGCAACGCCGTCTCCCTCCTCCGCCCAAATgtaagcacta ... tgtgttgcagGCAACTAGTGGCAACCAAAACAACATGCTCATCCTGCAAGAGACCTGCACC
EST: TCGCCAAGGGCCAGCACCACGGCAACGCCGTCTCCCTCCTCCGCCCAAAT GCAACTAGTGGCAACCAAAACAACATGCTCATCCTGCAAGAGACCTGCACCEST: gi|31663968|gb|CD573148.1|CD573148
genomic: TCGCCAAGGGCCAGCACCACGGCAACGCCGTCTCCCTCCTCCGCCCAAATgtaagcacta ... tgtgttgcagGCAACTAGTGGCAACCAAAACAACATGCTCATCCTGCAAGAGACCTGCACC
EST: TCGCCAAGGGCCAGCACCACGGCAACGCCGTCTCCCTCCTCCGCCCAAAT GCAACTAGTGGCAACCAAAACAACATGCTCATCCTG
genomic: TCGCCAAGGGCCAGCACCACGGCAACGCCGTCTCCCTCCTCCGCCCAAATgtaagcacta ... tgtgttgcagGCAACTAGTGGCAACCAAAACAACATGCTCATCCTG
atattttttactctcttcattacccctgatgaatttctgatgagatgtgttgcagGCAACTAGTGGCAACCAAAACAACATGCTCATCCTGCAAGAGACCTGCACCGACCCGTCAGGCTCTCTGGTGGTGTACGCCCCGGTGGACGTGCAGTCCA
ttctgat putative branch site (score: 122)
atgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatatatatctaaacaacatgcagtataaataagttcgcaatacatattttttactctcttcattacccctgatgaatttctgatgagatgtgttgcagGCAACTAGTGGCAACCAAAACAACATGCTCATCCTGCAAGAGACCTGCACCGACCCGTCAGGCTCTCTGGTGGTGTACGCCCCGGTGGACGTGCAGTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatga