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...ccttaaccctcccttcgccaaaccatctctgttttttaatcaaagctgaaacctcatgacaaatctgaaggaacttttttccccataacttgtcaatcagATTCTTGTTCCATTGCCAGAGCCGGATGCTAGACATGCTATGTTTGAAGAGCTCCTGCCATATACACCTGGCACAATGGAGATTCCCTATGATGTTCTTG
species | Zea mays |
transcript | GRMZM2G115766_T02 |
intron # | 8 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: ATTTACCATGGGAGTTGGATGCAGCAATGCTGCGTCGGCTGGAGAAGCGT ATTCTTGTTCCATTGCCAGAGCCGGATGCTAGACATGCTATGTTTGAAGAGEST: gi|6127247|gb|AW129893.1|AW129893
genomic: ATTTACCATGGGAATTGGATGCAGCAATGCTGCGTCGGCTGGAGAAGCGTgtatcctttt ... tgtcaatcagATTCTTGTTCCATTGCCAGAGCCGGATGCTAGACATGCTATGTTTGAAGAG
EST: ATTTACCATGGGAGTTGGATGCAGCAATGCTGCGTCGGCTGGAGAAGCGT ATTCTTGTTCCATTGCCAGAGCCGGATGCTAGACATGCTATGTTTGAAGAGEST: gi|67014219|gb|CO442968.1|CO442968
genomic: ATTTACCATGGGAATTGGATGCAGCAATGCTGCGTCGGCTGGAGAAGCGTgtatcctttt ... tgtcaatcagATTCTTGTTCCATTGCCAGAGCCGGATGCTAGACATGCTATGTTTGAAGAG
EST: ATTTACCATGGGAGTTGGATGCAGCAATGCTGCGTCGGCTGGAGAAGCGT ATTCTTGTTCCATTGCCAGAGCTGGATGCTAGACATGCTATGTTTGAAGAGEST: gi|5714102|gb|AI944087.1|AI944087
genomic: ATTTACCATGGGAATTGGATGCAGCAATGCTGCGTCGGCTGGAGAAGCGTgtatcctttt ... tgtcaatcagATTCTTGTTCCATTGCCAGAGCCGGATGCTAGACATGCTATGTTTGAAGAG
EST: ATTTACCATGGGAGTTGGATGCAGCAATGCTGCGTCGGCTGGAGAAGCGT ATTCTTGTTCCATTGCCAGAGCCGGATGCTAGACATGCTATGTTTGAAGAG
genomic: ATTTACCATGGGAATTGGATGCAGCAATGCTGCGTCGGCTGGAGAAGCGTgtatcctttt ... tgtcaatcagATTCTTGTTCCATTGCCAGAGCCGGATGCTAGACATGCTATGTTTGAAGAG
ctgaaacctcatgacaaatctgaaggaacttttttccccataacttgtcaatcagATTCTTGTTCCATTGCCAGAGCCGGATGCTAGACATGCTATGTTTGAAGAGCTCCTGCCATATACACCTGGCACAATGGAGATTCCCTATGATGTTCTTG
ccccataac putative branch site
aactttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttaaccctcccttcgccaaaccatctctgttttttaatcaaagctgaaacctcatgacaaatctgaaggaacttttttccccataacttgtcaatcagATTCTTGTTCCATTGCCAGAGCCGGATGCTAGACATGCTATGTTTGAAGAGCTCCTGCCATATACACCTGGCACAATGGAGATTCCCTATGATGTTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT