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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcagcataaataaatactgttcattcttgctgagatactgtggtgcagtttatatgctattgcattgctggaattatacttgttccttttctgtaaacagGTTGCTCGTAAAATGAGAGAGGAGGATGGATTTTATTACCCTCACAATTTAGATTTCCGTGGGCGTGCATACCCTATGCATCCTCATTTGAGTCACCTAG

Basic information

species Zea mays
transcript GRMZM2G115564_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115564_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os06g44230.1 (Oryza sativa), 3'ss of exon 8
gtatgcagcataaataaatactgttcattcttgctgagatactgtggtgcagtttatatgctattgcattgctggaattatacttgttccttttctgtaaacagGTTGCTCGTAAAATGAGAGAGGAGGATGGATTTTATTACCCTCACAATTTAGATTTCCGTGGGCGTGCATACCCTATGCATCCTCATTTGAGTCACCTAG
||| |   |||||||    | | ||  | | | |  ||||| |    | |||||| | |  |  |   ||  ||  | ||              |||||||||||||||||| ||||||||||||||||||||||||||||| || || ||| | ||||| ||||| |||||||||||||||||| | ||| | || |||||||
gtacgtgacataaattttcattctttgtaccttc--agatatttc--ttcagttttttttttcgtatgtta-tgacactac----------cacctgtaaacagGTTGCTCGGAAAATGAGAGAGGAGGATGGATTTTATTATCCCCATAATCTTGATTTTCGTGGCCGTGCATACCCTATGCATGCACATCTAAGCCACCTAG

upper sequence: GRMZM2G115564_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA04G24350.1 (Glycine max), 3'ss of exon 3
---gtatgcagcataaataaatactgttcattcttgc-tgagatactgtggtgcagtttatatgctattgcattgctggaattatacttgttccttttctgtaaacagGTTGCTCGTAAAATGAGAGAGGAGGATGGATTTTATTACCCTCACAATTTAGATTTCCGTGGGCGTGCATACCCTATGCATCCTCATTTGAGTCACCTAG
         |   | ||  ||   |   |||| |    |   ||||| |       || |   | |     ||   |  ||  | |    ||| |       |||||||| || || ||||||| ||| ||||| || |||||||| ||||||||| | |||||||||||  | ||||| ||||||||||||||||||| |||  |||
taatcgcataatctgaactaa-gtttaccattatcatgttcaatactatcccatgtttcactagttgagcaataatttaaagaaaatacattctt-------aaacagGTGGCACGAAAAATGAAAGATGAGGAAGGCTTTTATTATCCTCACAATCTTGATTTCCGTGGTAGAGCATATCCTATGCATCCTCATTTGAATCATTTAG

upper sequence: GRMZM2G115564_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA06G24890.1 (Glycine max), 3'ss of exon 1
---gtatgcagcataaataaatactgttcattcttgc-tgagatactgtggtgcagtttatatgctattgcattgctggaattatacttgttccttttctgtaaacagGTTGCTCGTAAAATGAGAGAGGAGGATGGATTTTATTACCCTCACAATTTAGATTTCCGTGGGCGTGCATACCCTATGCATCCTCATTTGAGTCACCTAG
    |    |   | ||  ||   |   |||| |  | |   ||||| |       || |   | |     ||   |  ||  | |    ||| |       |||||||| || || ||||||| ||| ||||| || |||||||| || |||||| | || ||||||||  | ||||| ||||||||||||||||||| |||  |||
taattgaataatctgaactaa-gtttaccattatcacattcaatactatcccatgtttcactagttgagcaataatttaaaggaaatacattctt-------aaacagGTGGCACGAAAAATGAAAGATGAGGAAGGCTTTTATTATCCACACAATCTTGACTTCCGTGGCAGAGCATATCCTATGCATCCTCATTTGAATCATTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtttatatgctattgcattgctggaattatacttgttccttttctgtaaacagGTTGCTCGTAAAATGAGAGAGGAGGATGGATTTTATTACCCTCACAATTTAGATTTCCGTGGGCGTGCATACCCTATGCATCCTCATTTGAGTCACCTAG
                               tacttgttccttttct  CT-rich tract
                          aattatactt  TA-rich tract