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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caattgtttgagtatttacttctatattgtctgcagtgtggaccatttggagttatgcctgattattctccgcgtttgctgattatttttccaattgcagGTTTATTTTCTGCCGGGCAGTGCTTTTCTATTTCCACTCAGATGAGCACGAATATCTACCGACCTGCTTACCTAGTCTTCCAGAGTCAGTCTCCCCGCAT

Basic information

species Zea mays
transcript GRMZM2G115304_T01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6270000|gb|AW157971.1|AW157971
EST:     GTCTGGGGGCAAATTTTACCAGACCCATTTCTCAGACGGCTGATTCTCAG                         GTTTATTTTATGACGGGCAGTGCTTTTCTATTTCCACTCAGATGAGCACGA
genomic: GTCTGGGGGCAAATTTTACCAGACCCATTTCTCAGACGGCTGATTCTCAGgtaccttgta ... ccaattgcagGTTTATTTTCTGCCGGGCAGTGCTTTTCTATTTCCACTCAGATGAGCACGA
EST: gi|18166915|gb|BM336754.1|BM336754
EST:     GTCTGGGGGCAAATTTTACCAGACCCATTTCTCAGACGGCTGATTCTCAG                         GTTTATTTTCTGCCGGGCAGTGCTTTTCTATTTCCACTCAGATGAGCACGA
genomic: GTCTGGGGGCAAATTTTACCAGACCCATTTCTCAGACGGCTGATTCTCAGgtaccttgta ... ccaattgcagGTTTATTTTCTGCCGGGCAGTGCTTTTCTATTTCCACTCAGATGAGCACGA
EST: gi|211522667|gb|FL445638.1|FL445638
EST:     GTCTGGGGGCAAATTTTACCAGACCCATTTCTCAGACGGCTGATTCTCAG                         GTTTATTTTCTGCCGGGCAGTGCTTTTCTATTTCCACTCAGATGAGCACGA
genomic: GTCTGGGGGCAAATTTTACCAGACCCATTTCTCAGACGGCTGATTCTCAGgtaccttgta ... ccaattgcagGTTTATTTTCTGCCGGGCAGTGCTTTTCTATTTCCACTCAGATGAGCACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggagttatgcctgattattctccgcgtttgctgattatttttccaattgcagGTTTATTTTCTGCCGGGCAGTGCTTTTCTATTTCCACTCAGATGAGCACGAATATCTACCGACCTGCTTACCTAGTCTTCCAGAGTCAGTCTCCCCGCAT
                               tgctgat  putative branch site (score: 3)
                                     ttatttttcc  CT-rich tract
                                    attatttttccaatt  TA-rich tract