1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agttaaattgtcgagcctgtatacatcctacttcatatgccctgttcacattatgtatttaggtcaggttttcatacctttccgttctaacaatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAATGTGCAGAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCT
species | Zea mays |
transcript | GRMZM2G114758_T04 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|78118561|gb|DV536945.1|DV536945
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|110193278|gb|EC875176.1|EC875176
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|60345140|gb|DN212113.1|DN212113
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|86468292|gb|DY234662.1|DY234662
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|113664113|gb|DW825770.1|DW825770
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: CATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|71304851|gb|DR788540.1|DR788540
genomic: CATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|83279425|gb|DV943433.1|DV943433
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|78544567|gb|DV622065.1|DV622065
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAATGTGAAAATGGAGCTGAGATTATCAAEST: gi|211377879|gb|FL093310.1|FL093310
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|94473540|gb|EB702498.1|EB702498
genomic: TAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATTTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|89251519|gb|DY623305.1|DY623305
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTTTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|88750787|gb|DY534928.1|DY534928
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|78074927|gb|DV503361.1|DV503361
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTTTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|211480276|gb|FL093313.1|FL093313
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATCATCAA
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
tcacattatgtatttaggtcaggttttcatacctttccgttctaacaatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAATGTGCAGAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCT
ttctaac putative branch site (score: 84)
ttatgtattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttaaattgtcgagcctgtatacatcctacttcatatgccctgttcacattatgtatttaggtcaggttttcatacctttccgttctaacaatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAATGTGCAGAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT