1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ccttgttggtggctcctgttgggtctatagcctaccctaacttgggacgaaaaggctttgctgctgttttattgagatgacattaactttggttctgcagGATCTTATAGACTACTACAATTCTTCCACCATAAGAGATTGGGCTGGAAGGGCTACAGCCTTCAAAGCAACAGCAGGTATTGCAGATGGTTTGGCACCAA
species | Zea mays |
transcript | GRMZM2G114394_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TACCAGTCAGCGTCCCTGGAATTCTCATCACAGATGTCAGCAAAACGGAG GATCTTATAGACTACTACAATTCTTCCACCATAAAAGATTGGGCTGGAAGGEST: gi|78104120|gb|DV522538.1|DV522538
genomic: TACCATTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACGGAGgtattgcaga ... ggttctgcagGATCTTATAGACTACTACAATTCTTCCACCATAAGAGATTGGGCTGGAAGG
EST: TACCATTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACGGAG GATCTTATAGACTACTACAATTCTTCCACCATAAGAGATTGGGCTGGAAGGEST: gi|28909947|gb|CB331179.1|CB331179
genomic: TACCATTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACGGAGgtattgcaga ... ggttctgcagGATCTTATAGACTACTACAATTCTTCCACCATAAGAGATTGGGCTGGAAGG
EST: TACCATTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACGGAG GATCTTATAGACTACTACAATTCTTCCACCATAAGAGATTGGGCTGEST: gi|61118151|gb|DN559112.1|DN559112
genomic: TACCATTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACGGAGgtattgcaga ... ggttctgcagGATCTTATAGACTACTACAATTCTTCCACCATAAGAGATTGGGCTG
EST: TCATCACAGATGTCCGCAAAACAGAG GATCTTATAGACTACTACAATTCTTCCACCATAAGAGATTGGGCTGGAAGGEST: gi|67043292|gb|CO469547.1|CO469547
genomic: TCATCACAGATGTCAGCAAAACGGAGgtattgcaga ... ggttctgcagGATCTTATAGACTACTACAATTCTTCCACCATAAGAGATTGGGCTGGAAGG
EST: TACCAGTCAGCGTCCCTGGAATTCTCATCACAGATGTCAGCAAAACGGAG GATCTTATAGACTACTACNATTCTTC-ACCATAAGAGAT-GGGCTGGAAGG
genomic: TACCATTCAGCATCCCTGGAATTCTCATCACAGATGTCAGCAAAACGGAGgtattgcaga ... ggttctgcagGATCTTATAGACTACTACAATTCTTCCACCATAAGAGATTGGGCTGGAAGG
gacgaaaaggctttgctgctgttttattgagatgacattaactttggttctgcagGATCTTATAGACTACTACAATTCTTCCACCATAAGAGATTGGGCTGGAAGGGCTACAGCCTTCAAAGCAACAGCAGGTATTGCAGATGGTTTGGCACCAA
cattaac putative branch site (score: 89)
tgttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttgttggtggctcctgttgggtctatagcctaccctaacttgggacgaaaaggctttgctgctgttttattgagatgacattaactttggttctgcagGATCTTATAGACTACTACAATTCTTCCACCATAAGAGATTGGGCTGGAAGGGCTACAGCCTTCAAAGCAACAGCAGGTATTGCAGATGGTTTGGCACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- -tgttggt
- - - - - -gctcctg
- - - - - - - - - - - - - - - - - - - - - - -gacgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacatt