1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttggtcatacttccttccactttctgtaactacggataacctctgttttatacacacatgaatgaaaatgctggtcacatagttgccggacagctgatgtaccgaaccgctcgtacttaacttgctgcagATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACACTTTGCGCACAAAATAAACAGCTTCAGCACGGCACCTAAGAAGCTGTTGG
species | Zea mays |
transcript | GRMZM2G114126_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAG ATATGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTACCAGTACACACACEST: gi|74236528|gb|DT644442.1|DT644442
genomic: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAGgttggtcata ... cttgctgcagATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACACEST: gi|60356147|gb|DN223120.1|DN223120
genomic: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAGgttggtcata ... cttgctgcagATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACACEST: gi|67022184|gb|CO450933.1|CO450933
genomic: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAGgttggtcata ... cttgctgcagATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACACEST: gi|61118185|gb|DN559146.1|DN559146
genomic: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAGgttggtcata ... cttgctgcagATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACACEST: gi|78120438|gb|DV538822.1|DV538822
genomic: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAGgttggtcata ... cttgctgcagATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACACEST: gi|60396557|gb|DN229426.1|DN229426
genomic: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAGgttggtcata ... cttgctgcagATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACACEST: gi|67032806|gb|CO461555.1|CO461555
genomic: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAGgttggtcata ... cttgctgcagATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACACEST: gi|71759542|gb|DR957479.1|DR957479
genomic: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAGgttggtcata ... cttgctgcagATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAG ATTTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACACEST: gi|8367795|gb|BE050740.1|BE050740
genomic: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAGgttggtcata ... cttgctgcagATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACAC
EST: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTTGCCCCTGCCCCACAGAACGACGGGTATCAEST: gi|14243772|gb|BG841435.2|BG841435
genomic: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAGgttggtcata ... cttgctgcagATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCA
EST: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAG ATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACAC
genomic: AACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAGgttggtcata ... cttgctgcagATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACAC
cacatagttgccggacagctgatgtaccgaaccgctcgtacttaacttgctgcagATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACACTTTGCGCACAAAATAAACAGCTTCAGCACGGCACCTAAGAAGCTGTTGG
acttaac putative branch site (score: 392)
tacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtcatacttccttccactttctgtaactacggataacctctgttttatacacacatgaatgaaaatgctggtcacatagttgccggacagctgatgtaccgaaccgctcgtacttaacttgctgcagATCTGGAGAGTCGCCCCTGCCCCACAGAACGACGGGTATCAGTACACACACTTTGCGCACAAAATAAACAGCTTCAGCACGGCACCTAAGAAGCTGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT