Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaaataaccatcttgaaaaatatattgttggcaatgtataataacacttgtttttttaatggtttgcaattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG

Basic information

species Zea mays
transcript GRMZM2G113619_T04
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113619_T04 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os09g24650.3 (Oryza sativa), 3'ss of exon 7
gtaagtgaaataaccatcttgaaaaatat----attgttggc--aatgtataataacacttg----tttttttaatggtttgcaa-ttgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG
|| ||||||| ||   |||| ||  || |    ||  |||      |||| |  | || | |    |  | || ||| | |   | |||| |||||||||| |||||||||||||| || ||||| || ||||| || |||||||||||| | |||||||||||||||||||||||| |||||
gtgagtgaaagaatgctctttaactatctggttatcattgttttgttgtacatcatcattagaagttggtattgatgctctattacttgacagCTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCTTGGGCAGTGAGTATCTTGCAGCGCCGCAGACAGCGACAG

upper sequence: GRMZM2G113619_T04 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA20G04870.1 (Glycine max), 3'ss of exon 5
gtaagtgaaataa--ccatcttgaaaaa--------tatattgttggcaatgtataataacac-ttgtttttttaa--tggtt-tgcaattgaa------agCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG
|| |||||  | |   ||| ||| | ||         | | | || | | || ||   || || ||||     |||  |  ||   |||   ||      |||||||  || | |||||||||||||| ||  | || | ||| ||||||||||||||||||||||| ||||| |||||  |||| ||||| 
gtgagtgactttagttcattttggataagtggttaacacagtatttgtattgcattcaaatacattgtcggcctaacctaattacacaaccaaactctgcagCTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAA

upper sequence: GRMZM2G113619_T04 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA07G35750.2 (Glycine max), 3'ss of exon 5
-----------------gtaagtga--aataaccatcttgaaaaatatattgttggcaa-tgtataataacacttgtttttttaatggtttgcaattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG
                  | || ||  | |        |   |  | ||||| |  ||| |  || ||    ||    |  | |   |       |    |||||||  || | || ||||||||||| ||  | || | ||| ||||||||||||||||||||||| ||||| |||||  |||| ||||| 
gtgagtgactttagttcattagggataagtggttcatatagtagttgtattgctttcaaatacatcattgggctaacctcatcacatggccattctctgcagCTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAA

upper sequence: GRMZM2G113619_T04 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA01G05800.1 (Glycine max), 3'ss of exon 6
------------------gtaagtgaaataaccatcttgaaaaatatattgttggcaatgtataat--aacacttgtttttttaatggtttgcaattg---aaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG
                       | |   ||     |  ||   | ||||| |  |||  |  |||  |   |     |  |     | |  | |||      |||||||  || | ||||||||||| || ||  | || | |||||||||||||||||||||||||||  ||||||| ||  |||| ||||| 
gtgagtgatttgagtttttctttttagtcaaattcttccaatgttttattgatttcaaaatgcaatttagagccaacctaatcgtcagctctctattttctgcagCTTTTCTTGCTTCGTGCTGCTGGATTTCTATTACCTTGCTACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAA

upper sequence: GRMZM2G113619_T04 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA02G11960.1 (Glycine max), 3'ss of exon 6
-----------------------gtaagtgaaataaccatcttgaaaaatatattgttggc-----aatgtataataacacttgtttttttaatggtttgcaattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG
                        | ||| || |      | ||   ||| | || |||       |||| |    |   |     |  |        |    |    |||||||  || | ||||| ||||| || ||  | || | |||||||||||||||||||||||||||  ||||||| ||  |||| ||||| 
gtaagtgatttgagttttttctttttagtcaagttcttcccatgtccaatgttttattgatttcaaaatgcaatgcagagcccacctaatctgctcactattttctgcagCTTTTCTTGCTTCGTGCCGCTGGATTTCTATTACCTTGCTACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAA

upper sequence: GRMZM2G113619_T04 (Zea mays), 3'ss of exon 8
lower sequence: AT2G02960.2 (Arabidopsis thaliana), 3'ss of exon 6
------------------gtaagtgaaataaccatcttgaaaaatatatt---gttggcaatgtataataacacttgtttttttaatggtttgcaattgaa---agCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG
                   |   |    |     ||||  |   | | |    ||||    |   |  ||||||          ||| || ||    | |    ||||| | ||| | || |||||||| || || ||||| | ||| |||||||||||||| ||||||||  | |||||||| ||||||||||||
gtaagctcattgaagcttcttccttttttctttttcttttattttttgtctcagttgcatttaagttgtaacaccaaaccacaaaattgtctgattcttattttagCTTGTCCTGCTCCGAGCTGCTGGATTTCTTCTTCCATGCTATATCATGGCTTGGGCCATCAGTATTCTACAGCGCCGAAGACAGAGACAG

upper sequence: GRMZM2G113619_T04 (Zea mays), 3'ss of exon 8
lower sequence: Vv17s0000g06230.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------------------------gtaagtgaa-ataaccatcttgaaaaatatattgttggcaatgtataataacacttgtttttttaatg---gtttgcaattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG
                                         ||   || |  |  | ||  |   |  |||||   |||     |  ||      |     ||  |||     |      |||| ||||||| ||| | || |||||||||||||| || || | |||||| ||||| ||||| |||||||| |||||||| || ||||| ||||||
gtgagtgagatatgtgtactattcatttgataataatttgtgtgcttgtatgtgtctatacttgta--tatatccatggttgcatggaagtggtttcaccattaaaatacatatggatgcttgacagCTTTTCCTGCTTCGAGCTGCTGGTTTCCTTCTCCCTTGCTACATTATGGCCTGGGCTATCAGTATATTGCAGCGTCGAAGACAAAGACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76280759|gb|DV020327.1|DV020327
EST:     CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA                         CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
genomic: CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
EST: gi|37399815|gb|CF637245.1|CF637245
EST:     CACTGACTCTAACTGATGAAGATGACGTCGACACTTCAGCGATGTTTTCA                         CTTTTTCT-TATGGGTGCTGCTGGTTTCCTGCTTCCGTTGTACATCATGGC
genomic: CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGT-TGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGC
EST: gi|78086641|gb|DV515034.1|DV515034
EST:     CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA                         CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
genomic: CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
EST: gi|19769762|gb|BQ034483.1|BQ034483
EST:     CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA                         CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
genomic: CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
EST: gi|50326768|gb|CO521894.1|CO521894
EST:     CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA                         CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
genomic: CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
EST: gi|71766652|gb|DR964589.1|DR964589
EST:     CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA                         CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
genomic: CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
EST: gi|6827480|gb|AW331123.1|AW331123
EST:     CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA                         CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
genomic: CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
EST: gi|93284055|gb|EB676319.1|EB676319
EST:     CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA                         CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
genomic: CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
EST: gi|78106313|gb|DV524731.1|DV524731
EST:     CTGACTCTAACTGATGAAGATGAGGACGACACTTCAGCGATGTTTTCA                         CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
genomic: CTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
EST: gi|93283252|gb|EB675516.1|EB675516
EST:     CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA                         CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
genomic: CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
EST: gi|19769358|gb|BQ034079.1|BQ034079
EST:     GACACTTCAGCGATGTTTTCA                         CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
genomic: GACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
EST: gi|71311804|gb|DR792363.1|DR792363
EST:     CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA                         CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
genomic: CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
EST: gi|60338944|gb|DN205917.1|DN205917
EST:     CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA                         CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
genomic: CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
EST: gi|94472719|gb|EB701677.1|EB701677
EST:     CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA                         CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
genomic: CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
EST: gi|91877838|gb|EB407795.1|EB407795
EST:     CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA                         CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
genomic: CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
EST: gi|211143061|gb|FL281156.1|FL281156
EST:     CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA                         CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
genomic: CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
EST: gi|60337669|gb|DN204642.1|DN204642
EST:     CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA                         CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
genomic: CACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
EST: gi|78106314|gb|DV524732.1|DV524732
EST:     CTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA                         CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT
genomic: CTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCAgtaagtgaaa ... caattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattgttggcaatgtataataacacttgtttttttaatggtttgcaattgaaagCTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG
           aatgtataataacact  TA-rich tract