1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aagatctaatcatactaaacttaaccatattgctacatgcctgtgtggacaataaaatatcatgttttctgatatgcgctacatgcaatgactatttcagGCCTTGGAGAAGTGTCAACTGAAGACAGCAATCAGCACCACCTCTGCTCTTCTGGATACAGTTG
species | Zea mays |
transcript | GRMZM2G113203_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCAACAATTTGGATCCCCTTGGCCAGCATTCTGATGAAGAGATATGGGAG GCCTTGGAGAAGTGTCAACTGAAGACAGCAATCAGCACCACCTCTGCTCTTEST: gi|24934295|gb|CA452513.1|CA452513
genomic: GCAACAATTTGGATCCCCTTGGCCAGCATTCTGATGAAGAGATATGGGAGgttagaaaaa ... actatttcagGCCTTGGAGAAGTGTCAACTGAAGACAGCAATCAGCACCACCTCTGCTCTT
EST: GCAACAATTTGGATCCCCTTGGCCAGCATTCTGATGAAGAGATATGGGAG GCCTTGGAGAAGTGTCAACTGAAGACAGCAATCAGCACCACCTCTGCTCTTEST: gi|24934154|gb|CA452372.1|CA452372
genomic: GCAACAATTTGGATCCCCTTGGCCAGCATTCTGATGAAGAGATATGGGAGgttagaaaaa ... actatttcagGCCTTGGAGAAGTGTCAACTGAAGACAGCAATCAGCACCACCTCTGCTCTT
EST: GCAACAATTTGGATCCCCTTGGCCAGCATTCTGATGAAGAGATATGGGAG GCCTTGGAGAAGTGTCAACTGAAGACAGCAATCAGCACCACCTCTGCTCTTEST: gi|32934452|gb|CF039264.1|CF039264
genomic: GCAACAATTTGGATCCCCTTGGCCAGCATTCTGATGAAGAGATATGGGAGgttagaaaaa ... actatttcagGCCTTGGAGAAGTGTCAACTGAAGACAGCAATCAGCACCACCTCTGCTCTT
EST: GCAACAATTTGGATCCCCTTGGCCAGCATTCTGATGAAGAGATATGGGAG GCCTTGGAGAAGTGTCAACTGAAGACAGCAATCAGCACCACCTCTGCTCTTEST: gi|18385230|gb|BM418429.1|BM418429
genomic: GCAACAATTTGGATCCCCTTGGCCAGCATTCTGATGAAGAGATATGGGAGgttagaaaaa ... actatttcagGCCTTGGAGAAGTGTCAACTGAAGACAGCAATCAGCACCACCTCTGCTCTT
EST: GCAACAATTTGGATCCCCTTGGCCAGCATTCTGATGAAGAGATATGGGAG GCCTTGGAGAAGTGTCAACTGAAGACAGCAATCAGCACCACCTCTGCTCTT
genomic: GCAACAATTTGGATCCCCTTGGCCAGCATTCTGATGAAGAGATATGGGAGgttagaaaaa ... actatttcagGCCTTGGAGAAGTGTCAACTGAAGACAGCAATCAGCACCACCTCTGCTCTT
tggacaataaaatatcatgttttctgatatgcgctacatgcaatgactatttcagGCCTTGGAGAAGTGTCAACTGAAGACAGCAATCAGCACCACCTCTGCTCTTCTGGATACAGTTG
ttctgat putative branch site (score: 3)
ctatttc putative PPT
aataaaatatcatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagatctaatcatactaaacttaaccatattgctacatgcctgtgtggacaataaaatatcatgttttctgatatgcgctacatgcaatgactatttcagGCCTTGGAGAAGTGTCAACTGAAGACAGCAATCAGCACCACCTCTGCTCTTCTGGATACAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA