Sequence
atgc intronic sequence ATGC exonic sequencegtatactctttatgttgtggtcaaataactcttgacttgtgctttccaaacccaggttcctaatgtagtgttacatgtattgcagCTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G110834_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 3'ss of exon 7
gtatactctttatgttgt--ggtcaaataactcttgacttgtgctttccaaacccaggttcctaatgtagtgttacatgtattgcagCTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTG
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gtatgcatttaatcttacacgatcaatttatttttggcttctgtcttctgaatctagattccttacatagtttcacatgtcctgcagCTCACCTTTCGCCATATGCTGCCAAACTTTAATGAGTGTTGGTGGGATAGCATCGTACTAGACATATTAATCTGCAATTGGTTTG
upper sequence: GRMZM2G110834_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA20G25830.2 (Glycine max), 3'ss of exon 10
-------------------------------------------gtatactctttatgttgtggtcaaataactcttgacttgtgctttccaaacccaggttcctaatgtagtgt------tacatgtattg-------cagCTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTG
|| | | | | ||| |||| |||| || || | | | | | | | | | | ||| ||| ||| |||||||| || ||||||||||||||||| ||||||||||||||||| ||| | || ||||| |||||||||||||||||||
gtaagcccttatctgattaatacactccgattttttcacataggtgtggttatgggttagtgcatccataaagcttgtttttcttttgatatatctatatcgtttgaattgcttacataacatctgtgttgtaatcttcagTATACTTTTCGTCACATGTTGCCAAATTTCAATGAGTGCTGGTGGGACAGTATTATTCTTGACATTTTGATCTGCAATTGGTTTG
upper sequence: GRMZM2G110834_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA10G41430.1 (Glycine max), 3'ss of exon 8
-------------------------------------------gtatactctttatgttgtggtcaaataactcttgacttgtgctttccaaacccaggttcctaatgtagtg-ttacat--------gtattg-------cagCTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTG
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gtaatccctgatctgattaatacactctgattttttcacataggtgtggttgtgggttagtgcatccgtaaagcttgattttttgttttgatatatctatatcttttgaattgcttacataccattctgtgttggcatcttcagTACACTTTTCGTCACATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGTATTATTCTTGACATCTTGATCTGCAATTGGTTTG
upper sequence: GRMZM2G110834_T02 (Zea mays), 3'ss of exon 7
lower sequence: AT1G15110.1 (Arabidopsis thaliana), 3'ss of exon 8
----gtatac-tctttatgttgtggtcaaataactcttgacttgtgctttccaaaccca--ggttc-------ctaatgtagtgttacatgtat----tgcagCTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTG
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gttggtctttgtcttcgttttcttatattacaggttccaatttgatatatacaaaaatatcgcttcgcctgtgtcaccgaaaagttatatttatgttctccagGTTACTTTTCGGCATATGTTACCAAATTTCAACGAGTGCTGGTGGGACAGTATTGTTCTTGATATCTTGATATGCAACTGGTTTG
upper sequence: GRMZM2G110834_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 3'ss of exon 8
-----------------------------------------------------------gtatactctttatgttgtggtcaaataactcttgacttgtgctttccaa------acccaggttcc-taatgt--agtgttacatgt--attgcagCTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTG
| ||| | ||||| | || ||| || || || | || || |||| ||| || ||| ||| ||| ||| ||||| ||||| ||||||||||| ||||| ||||| ||||| ||||||||||| ||| |||| ||||| || |||||||||||||||
gtcagtttcttggtctgataatgttattttgtgttttgcctcttaggttgtcatggttaatctaccttgtatgtctaag--aatgtgctcatg-tttctgttctcaaactgactgtttgagttctataaagttaagttttatttgtcaatttcagCTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTG
upper sequence: GRMZM2G110834_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv17s0000g03010.t01 (Vitis vinifera), 3'ss of exon 7
--------------gtatactctttatgttgtggtcaaataactcttgacttgtgctttccaaacccaggttcctaatgtagtgttacat---gtatt-gcagCTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTG
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attttggaaggcaaatgggcagtacatgaggtgttgatccacctttatgc---agtcttcgcatgttattttgctgctgtataattcattttcgtatttgcagCTCACTTTCCGCCACATGTTGCCAAACTTCAATGAGTGCTGGTGGGATAGTATTGTTTTGGACGTTCTAGTATGCAATTGGTTTG
upper sequence: GRMZM2G110834_T02 (Zea mays), 3'ss of exon 7
lower sequence: PP1S159_14V6.1 (Physcomitrella patens), 3'ss of exon 7
--------------------------------------------------------------------gtatactctttatgttgtggtcaaataactcttgacttgtg-----ctttccaaacccaggttcctaatgtagtgttacatgtat-tgcagCTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTG
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gtattgtttttgggtttctagtgctcatataataaagatagattcttatgcttatcactgtatgtttggta-gctaagtgtaagaaggtaaatttgattttaatttgagggaaatattgcacatcta--taactgattttctgccctgtacatatgcagAGAAGTCTTATTCATATGCTCCCAAATTTCAACGAATGCTGGTGGGATAGCTTTGTCCTAGACGTATTAATTTGCAATTGGTTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|74231927|gb|DT639841.1|DT639841EST: CAATTGGGTTGGAATTAATGGAG CTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGC
genomic: CAATTGGGTTTGAATTAATGGAGgtatactctt ... tgtattgcagCTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttgacttgtgctttccaaacccaggttcctaatgtagtgttacatgtattgcagCTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTG
tcctaat putative branch site (score: 2)
taatgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatactctttatgttgtggtcaaataactcttgacttgtgctttccaaacccaggttcctaatgtagtgttacatgtattgcagCTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG