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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaacttgtacaataatgccttacatgctatgttggttcttacccctaccctactttggcaaatgctttgcatcagTTCTAGTTGGAACAAGGTGCAGACTGGCAGAGATGCTGAGGGGTGTGTGTACTCATAGTAACAATGGTACTCGTCGTCGTCGTAATATGGCTAATAATCT

Basic information

species Zea mays
transcript GRMZM2G110143_T03
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149070637|gb|EE159048.2|EE159048
EST:     TCAAGAGGTTTTGAATCAAATCATGAAATTCCAGATGGATTTCATGATTG                         TTTTAGTTGGAACAAGGTGCAGACTGGCAGAGATGCTGAGGGGTGTGTGTA
genomic: TCAAGAGGTTCTGAATCAAATCATGAAATTCCAGATGGATCTCATGATTGgtaagaaaac ... tttgcatcagTTCTAGTTGGAACAAGGTGCAGACTGGCAGAGATGCTGAGGGGTGTGTGTA
EST: gi|149107882|gb|EE292242.2|EE292242
EST:     TCAAGAGGTTTTGAATCAAATCATGAAATTCCAGATGGATCTCATGATTG                         TTCTAGTTGGAACAAGGTGCAGACTGGCAGAGATGCTGAGGGGTGTGTGTA
genomic: TCAAGAGGTTCTGAATCAAATCATGAAATTCCAGATGGATCTCATGATTGgtaagaaaac ... tttgcatcagTTCTAGTTGGAACAAGGTGCAGACTGGCAGAGATGCTGAGGGGTGTGTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatgctatgttggttcttacccctaccctactttggcaaatgctttgcatcagTTCTAGTTGGAACAAGGTGCAGACTGGCAGAGATGCTGAGGGGTGTGTGTACTCATAGTAACAATGGTACTCGTCGTCGTCGTAATATGGCTAATAATCT
               ttcttac  putative branch site (score: 2)