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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctacttccttggtcattcgagcaacatcataaccatttccttaacgttatttttttctgtcttcgttgtgttcactatgcacactttattttgctttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAAGACAGCTATTGATTGTTGTGTTTGTCGAACCTTCCTATAGTGCATTAGA

Basic information

species Zea mays
transcript GRMZM2G109785_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109785_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os12g05650.1 (Oryza sativa), 3'ss of exon 9
gtctacttccttggtcattcgagcaacatcataaccatttcct-taacgttatttttttctgtcttcgttgtgttcactatgcacactttattttgctttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAAGACAGCTATTGATTGTTGTGTTTGTCGAACCTTCCTATAGTGCATTAGA
                |||  |    | | || || | || || | |   | |||  |  | ||  |    |  |   |||  |    |||   |||  |  ||||||| |||    |||||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||| || ||     |    |||    |       |  |
--------------gtattgcaatgccttgattactactttctgttaaaatctttggtcatctcagcaacatcatacttatatatctcttaacatgccatc-atatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAGACAGCTACTGATTCTTATGAAAACCCGGGCTTTGAGTTCCTTTCTGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttctgtcttcgttgtgttcactatgcacactttattttgctttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAAGACAGCTATTGATTGTTGTGTTTGTCGAACCTTCCTATAGTGCATTAGA
                                 ctttattttgcttttt  CT-rich tract
                                actttattttgctttt  TA-rich tract