1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...taacatgctttgggatcattcatagtcttagaaaatatatcattttagcggaaagaaactttatttttttttctgattcgacaatgaaaaatctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTATGGGTGGCCATGCCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTG
species | Zea mays |
transcript | GRMZM2G108849_T04 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|6095470|gb|AW120137.1|AW120137
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: GAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|76282755|gb|DV022323.1|DV022323
genomic: GAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACCAGCACATEST: gi|6095737|gb|AW120404.1|AW120404
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACAT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGNGGCATTEST: gi|5510799|gb|AI857183.1|AI857183
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCCCAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|33103523|gb|CF063483.1|CF063483
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|31354590|gb|CD438947.1|CD438947
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAACGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|211491805|gb|FL092420.1|FL092420
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|213184041|gb|FM183748.1|FM183748
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCEST: gi|78022002|gb|DV490389.1|DV490389
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATC
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|44901164|gb|CK827709.1|CK827709
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|60357237|gb|DN224210.1|DN224210
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|33101787|gb|CF061747.1|CF061747
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|31355458|gb|CD439815.1|CD439815
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAACGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|18963343|gb|BM660382.1|BM660382
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|60353949|gb|DN220922.1|DN220922
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|5005885|gb|AI711947.1|AI711947
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: GTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|60347557|gb|DN214530.1|DN214530
genomic: GTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATTTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|32797001|gb|CD949237.1|CD949237
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|32796767|gb|CD949003.1|CD949003
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACGGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|5922141|gb|AW055411.1|AW055411
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|24769380|gb|CA404509.1|CA404509
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAACGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|6020622|gb|AW065655.1|AW065655
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: GCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGNGGCATTEST: gi|5847576|gb|AW000655.1|AW000655
genomic: GCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGEST: gi|14203538|gb|BG837215.1|BG837215
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAG
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|60395804|gb|DN228674.1|DN228674
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|18385054|gb|BM418253.1|BM418253
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGEST: gi|60400644|gb|DN233451.1|DN233451
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCG
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|60338736|gb|DN205709.1|DN205709
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|5525631|gb|AI861524.1|AI861524
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|67013050|gb|CO441799.1|CO441799
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: AAAATGGTCCTGTAGAAGTTGCTTTCACAGTTCACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|5525441|gb|AI861334.1|AI861334
genomic: AAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|16377920|gb|BI992190.1|BI992190
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|14203094|gb|BG836771.1|BG836771
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|211495925|gb|FL479314.1|FL479314
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|113702838|gb|EE680342.1|EE680342
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|6012616|gb|AW062053.1|AW062053
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGEST: gi|60350570|gb|DN217543.1|DN217543
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGG
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|211486033|gb|FL092385.1|FL092385
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|60348499|gb|DN215472.1|DN215472
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATTTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|32797163|gb|CD949399.1|CD949399
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|5296139|gb|AI783014.1|AI783014
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTEST: gi|5922310|gb|AW055599.1|AW055599
genomic: CAGAGGTCTACAAAAATGGTCCTGTAGAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
EST: GAAGTTGCTTTCACAGTTTACGAG GATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
genomic: GAAGTTGCTTTCACAGTTTACGAGgtaatgtcca ... atctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATT
tagcggaaagaaactttatttttttttctgattcgacaatgaaaaatctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTATGGGTGGCCATGCCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTG
ttctgat putative branch site (score: 3)
aaagaaactttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacatgctttgggatcattcatagtcttagaaaatatatcattttagcggaaagaaactttatttttttttctgattcgacaatgaaaaatctgtcaagGATTTCGCACACTACAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTATGGGTGGCCATGCCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG