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...attttcgcacataaattatgggctactttatctaatggtctatgtagtttattgttccatcaattctgttcgaactcacaccccaacctctaattgatagAAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAATTATCCTTTCCGAACAAAATGCAATCGTCCCCAATGTGGAGCAGAAAA
species | Zea mays |
transcript | GRMZM2G107106_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGATCTAAGTCTGATGGTTTAAGGGGCTCAA AAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|61119710|gb|DN560671.1|DN560671
genomic: GGATCTAAGTCTGATGGTTTAAGGGGCTCAAgtaagtttcc ... taattgatagAAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATCTAAGTCTGATGGTTTAAGGGGCTCAA AAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|32929980|gb|CF034792.1|CF034792
genomic: GGATCTAAGTCTGATGGTTTAAGGGGCTCAAgtaagtttcc ... taattgatagAAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATCTAAGTCTGATGGTTTAAGGGGCTCAA AAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAEST: gi|71313388|gb|DR793244.1|DR793244
genomic: GGATCTAAGTCTGATGGTTTAAGGGGCTCAAgtaagtttcc ... taattgatagAAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
EST: GGATCTAAGTCTGATGGTTTAAGGGGCTCAA AAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
genomic: GGATCTAAGTCTGATGGTTTAAGGGGCTCAAgtaagtttcc ... taattgatagAAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAA
agtttattgttccatcaattctgttcgaactcacaccccaacctctaattgatagAAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAATTATCCTTTCCGAACAAAATGCAATCGTCCCCAATGTGGAGCAGAAAA
cctct CT-rich tract
taattgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttcgcacataaattatgggctactttatctaatggtctatgtagtttattgttccatcaattctgttcgaactcacaccccaacctctaattgatagAAGCAAAGATGCCAGAGGGCAGTTGGAAGTGTGAGCAGTGCAATAACATAAATTATCCTTTCCGAACAAAATGCAATCGTCCCCAATGTGGAGCAGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG