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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatgtgttcaccactgggaatgtggtattgctgagagtttgacatcagtggcattttctttgtataacctgtttgagtctgtattaatcaagtctgtaattggcagGATAATTGGAATAATTTGGAAAAGCCTTATGGAAGCATATTTTTAAGTATCCCTACAGTTCTTGATCCATCATTAGCTCCCGAAGGACATCATATACTTC

Basic information

species Zea mays
transcript GRMZM2G106531_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106531_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os11g36440.1 (Oryza sativa), 3'ss of exon 8
gtatgcatgtgttcaccactgggaatgtggtattgctgagagtttgacatcagtggcattttctttgtataacctgtttgagtctgtattaatcaagtc-----tgtaattggcagGATAATTGGAATAATTTGGAAAAGCCTTATGGAAGCATATTTTTAAGTATCCCTACAGTTCTTGATCCATCATTAGCTCCCGAAGGACATCATATACTTC
||| | |||  | |||   |||| ||  | |||  | |  | |  |    || ||  |  ||  |   | |||  |||| ||||  || |||   | |      |  ||||| |||||| | |||  ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||| ||||||||||
gtaggtatgactccactg-tgggtatcagatatcacaggcaatgggtacacaatgctaagttggt-acacaaca-gttttagtccataataacttaattctaattacaattgccagGATGACTGGGCTAATTTGGAGAAGCCTTATGGAAGCATATTTTTAAGTATCCCTACAGTGCTTGACCCATCCTTGGCTCCCGAAGGACACCATATACTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481285|gb|EY254207.1|EY254207
EST:     AAGCGTCAGTTCTGCCTGCTGGCACTGACTGCCACCATTTTATACTTGAG                         GATAATTGGAATAATTTGGAAAAGCCTTATGGAAGCATATTTTTAAGTATC
genomic: AAGCGTCAGTTCTGCCTGCTGGCACTGACTGCCACCATTTTATACTTGAGgtatgcatgt ... taattggcagGATAATTGGAATAATTTGGAAAAGCCTTATGGAAGCATATTTTTAAGTATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattttctttgtataacctgtttgagtctgtattaatcaagtctgtaattggcagGATAATTGGAATAATTTGGAAAAGCCTTATGGAAGCATATTTTTAAGTATCCCTACAGTTCTTGATCCATCATTAGCTCCCGAAGGACATCATATACTTC
                              tattaat  putative branch site (score: 2)
                              tattaatcaa  TA-rich tract