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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctctcggcttgacactgaaccttcgtcactctgttacaaaatttgcgtccttgattctttacttgttttccctccttttgtggtgtttgttgagtatggaaatgccttgtgaccctcagtaacacaatacttattgatttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAGCAACAATTTATCTATCATGCGTCTTGGATGGGGGCGTGATTTTAATAAG

Basic information

species Zea mays
transcript GRMZM2G104918_T03
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104918_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os04g59040.3 (Oryza sativa), 3'ss of exon 7
gtaagctctcggcttgacactgaaccttcgtcactctgttacaaaatttgcgtccttgattctttacttgttttccctccttttgtggtgtttgttgag-tatggaaatgccttgtgaccctcagtaacaca-atacttattgatttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAGCAACAATTTATCTATCATGCGTCTTGGATGGGGGCGTGATTTTAATAAG---
                     | |  |||     ||||     |||| |  |||| | |  |   |  || ||       || ||   |   | |  || ||     || |||| || |    | | ||||| ||  || || |||| ||| ||||||||||||||| || ||||| |||||||||||||||||||||| ||| | |  | || | | |        | ||| ||  | ||   | |  || |     
---------------------gtaagttctctgttctgcagtgaaatataagtccataa--caagatgtgattgtgtgtgttgtggaataggtatgaagataccactattccttttggcatatattgacacatatttttgtttatttaatctcagGGACCTGTATGCGCAATATATCTTGCAAAGCTTGAGGCAGTAGAGTGCTACC--CGATCTTTATCGTGAAAATATTGTATTTGTGC-CAACTGCAAAACTGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18177749|gb|BM378959.1|BM378959
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|5847381|gb|AW000460.1|AW000460
EST:     GATGCATTCTTGCCCGCGACACCAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGAT
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGAT
EST: gi|32919721|gb|CF024533.1|CF024533
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCC
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCC
EST: gi|37386984|gb|CF630684.1|CF630684
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTCCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|5525746|gb|AI861639.1|AI861639
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|37379871|gb|CF626703.1|CF626703
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|211101358|gb|FK999222.1|FK999222
EST:     GATGCATTCTTGCCCGCGACA-CAGCTCNAGAAGC-ATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTGTGAG-CAGTAGATTGCAA
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCT-TGAGGCAGTAGATTGCAA
EST: gi|113703949|gb|EE681453.1|EE681453
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|67017181|gb|CO445930.1|CO445930
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|211500492|gb|FL437349.1|FL437349
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|89106071|gb|DY576288.1|DY576288
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|211096403|gb|FK999193.1|FK999193
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|60393934|gb|DN226804.1|DN226804
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|67033584|gb|CO462333.1|CO462333
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|113703472|gb|EE680976.1|EE680976
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCATTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|67021936|gb|CO450685.1|CO450685
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|37386449|gb|CF630410.1|CF630410
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|7031378|gb|AW461161.1|AW461161
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|16926747|gb|BM079815.1|BM079815
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|18162979|gb|BM332818.1|BM332818
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|211096392|gb|FK999182.1|FK999182
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATNTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|213173898|gb|FM195700.1|FM195700
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|18177661|gb|BM378871.1|BM378871
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|4314542|gb|AI461596.1|AI461596
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|18177016|gb|BM378226.1|BM378226
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTATTTTAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|116816200|gb|EC858919.1|EC858919
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAGG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|71442868|gb|DR823918.1|DR823918
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|211093923|gb|FK999176.1|FK999176
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|37377641|gb|CF625441.1|CF625441
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|40335787|gb|CK369857.1|CK369857
EST:     TGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGCATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: TGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|51592318|gb|CV071464.1|CV071464
EST:     GATGCATTCTTGCCCGCGACANCAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTT
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTT
EST: gi|71439485|gb|DR820535.1|DR820535
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|60336871|gb|DN203844.1|DN203844
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|18168666|gb|BM338506.1|BM338506
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|60359049|gb|DN226022.1|DN226022
EST:     GATGCATTTTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|28984727|gb|BQ539162.2|BQ539162
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|37387484|gb|CF630938.1|CF630938
EST:     TGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: TGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|211091453|gb|FK999156.1|FK999156
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|31351589|gb|CD435946.1|CD435946
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|17930140|gb|BM267100.1|BM267100
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|31350632|gb|CD434989.1|CD434989
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAG-ACTCCAT                         GGACCTGTATGCCCAGTATATTTTTGCAA-GCTTGAGGCAGTAGATTGCAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTT-GCAAAGCTTGAGGCAGTAGATTGCAA
EST: gi|67023516|gb|CO452265.1|CO452265
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|16916399|gb|BM072828.1|BM072828
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
EST: gi|24765735|gb|CA400894.1|CA400894
EST:     GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCAT                         GGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG
genomic: GATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 938

ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAGCAACAATTTATCTATCATGCGTCTTGGATGGGGGCGTGATTTTAATAAG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 422

ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAGCAACAATTTATCTATCATGCGTCTTGGATGGGGGCGTGATTTTAATAAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 390

ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAGCAACAATTTATCTATCATGCGTCTTGGATGGGGGCGTGATTTTAATAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 741

ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGACAACAGCTCAAGAAGCCATTCAGTACTCCATgtaagctctc ... ttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAGCAACAATTTATCTATCATGCGTCTTGGATGGGGGCGTGATTTTAATAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatggaaatgccttgtgaccctcagtaacacaatacttattgatttgatcgcagGGACCTGTATGCCCAGTATATTTTGCAAAGCTTGAGGCAGTAGATTGCAAGCAACAATTTATCTATCATGCGTCTTGGATGGGGGCGTGATTTTAATAAG
                                aatacttattgattt  TA-rich tract