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gttcgttttcttattacaactctttatgggtgcctaaaggactactagttccttacagataccctgacaataaggggaatgttctgtttgaatagGGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACAATCATGTATACCAGCGGAACAACTGGAGATCCCAAAGGTGTGATAATCA
species | Zea mays |
transcript | GRMZM2G104847_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATG GGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACAEST: gi|211174084|gb|FL129199.1|FL129199
genomic: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATGgttcgttttc ... gtttgaatagGGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACA
EST: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATG GGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACAEST: gi|211345429|gb|FL132812.1|FL132812
genomic: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATGgttcgttttc ... gtttgaatagGGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACA
EST: TGAGAGATTGGGCGTCTCCTGCTTTTTCTTGGGAAGAGTTTTCTTCAATG GGAAAACAAGACTACCAACTTTCCCATTAAAEST: gi|149076511|gb|EE165137.2|EE165137
genomic: TGAGAGATTGGGCGTCTCCTGCTTTT-CTTGGGAAGAGTTTTCTTCAATGgttcgttttc ... gtttgaatagGGAAAACAAGACTACCAACTT-CCCAATAAA
EST: TGAGAGATTGGGCGTCTCCCTGCTTTTCTTGGAAAGAGTTTTCTTCAATG GGAAAACAAGACTACCEST: gi|87157287|gb|DY402076.1|DY402076
genomic: TGAGAGATTGGGCGTCTCC-TGCTTTTCTTGGGAAGAGTTTTCTTCAATGgttcgttttc ... gtttgaatagGGAAAACAAGACTACC
EST: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATG GGGAAAACA-GACTACCAACTTCCCA-TAAACGTAAGGAAGATATCTGTACEST: gi|149086279|gb|EE175820.2|EE175820
genomic: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATGgttcgttttc ... gtttgaatagGG-AAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTAC
EST: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATG GGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACAEST: gi|149107582|gb|EE189463.2|EE189463
genomic: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATGgttcgttttc ... gtttgaatagGGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACA
EST: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATG GGAAAACAAGACTACCAACTTCCCCATAAACGTAAGGAAGATATCTGTAEST: gi|71430909|gb|DR811959.1|DR811959
genomic: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATGgttcgttttc ... gtttgaatagGGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTA
EST: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATG GGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTATCEST: gi|93282461|gb|EB674725.1|EB674725
genomic: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATGgttcgttttc ... gtttgaatagGGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTA-C
EST: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATG GGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACAEST: gi|149085816|gb|EE175338.2|EE175338
genomic: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATGgttcgttttc ... gtttgaatagGGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACA
EST: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATG GGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACAEST: gi|148970227|gb|EE021164.2|EE021164
genomic: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATGgttcgttttc ... gtttgaatagGGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACA
EST: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATG GGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACAEST: gi|211174082|gb|FL129197.1|FL129197
genomic: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATGgttcgttttc ... gtttgaatagGGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACA
EST: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATG GGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACAEST: gi|211174078|gb|FL129193.1|FL129193
genomic: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATGgttcgttttc ... gtttgaatagGGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACA
EST: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATG GGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACAEST: gi|211175750|gb|FL129201.1|FL129201
genomic: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATGgttcgttttc ... gtttgaatagGGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACA
EST: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATG GGAAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACEST: gi|148999540|gb|EE036511.2|EE036511
genomic: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATGgttcgttttc ... gtttgaatagGGAAAA-CAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTAC
EST: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATG GGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACAEST: gi|211399266|gb|FL448654.1|FL448654
genomic: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATGgttcgttttc ... gtttgaatagGGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACA
EST: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATG GGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACAEST: gi|211175754|gb|FL129205.1|FL129205
genomic: CTGAGAGATTGGGCGTCTCCTGCTTTTCTTGGGAAGAGTTTTCTTCAATGgttcgttttc ... gtttgaatagGGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACA
EST: TGAGAGATTGGGCGTCTCCTGCTTTTNCTTGGGAAGAGTTTTCTTCAATG GGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACA
genomic: TGAGAGATTGGGCGTCTCCTGCTTTT-CTTGGGAAGAGTTTTCTTCAATGgttcgttttc ... gtttgaatagGGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACA
actactagttccttacagataccctgacaataaggggaatgttctgtttgaatagGGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACAATCATGTATACCAGCGGAACAACTGGAGATCCCAAAGGTGTGATAATCA
ttctgttt CT-rich tract
tttgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgttttcttattacaactctttatgggtgcctaaaggactactagttccttacagataccctgacaataaggggaatgttctgtttgaatagGGAAAACAAGACTACCAACTTCCCAATAAACGTAAGGAAGATATCTGTACAATCATGTATACCAGCGGAACAACTGGAGATCCCAAAGGTGTGATAATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC