Sequence
atgc intronic sequence ATGC exonic sequence...atttttttaagtatttccttttttttcatgctagcattattcatttcgcagctttcaaaatatactgtattgatttttctttagttaaatcctctgtcagGGCAATAGCTAATATGGATATCAAGCTAGATTTTGTTCCACCATGGTTGATCAACTTCATGTCAAGGCAACTAATAGGCAGCGGGCATAAGCTGTATCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G104449_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os11g36070.1 (Oryza sativa), 3'ss of exon 8
-atttttttaagtat-ttccttttttttcatgctagcattattcatttcgcagctttcaaaatatactgtattgatttttctttagttaaatcctctg-tcagGGCAATAGCTAATATGGATATCAAGCTAGATTTTGTTCCACCATGGTTGATCAACTTCATGTCAAGGCAACTAATAGGCAGCGGGCATAAGCTGTATCAA
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tagtttttaaaatttattcatttgtgattctttttgctcaacaagtttc--agtttaataaatatgctg-atactccattttttaaccaaatcctccactcagGGCAATAGCTAATATGGATATTAAGCTAGACTTCGTTCCACCATGGCTTATCAACTTCATATCAAGGCAACTAATTGGCAGCGGCCATAAACTCTATCAG
upper sequence: GRMZM2G104449_T02 (Zea mays), 3'ss of exon 8
lower sequence: EFJ34640 (Selaginella moellendorffii), 3'ss of exon 7
atttttttaagtatttccttttttttcatgctagcattattcatttcgcagctt-tcaaaatatactgtattgatttttctttagttaaatcctctgtcagGGCAATAGCTAATATGGATATCAAGCTAGATTTTGTTCCACCATGGTTGATCAACTTCATGTCAAGGCAACTAATAGGCAGCGGGCATAAGCTGTATCAA
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----------------------------------------gtagtttgaagcttgtcgacgttctccgtgtt--ttcagtttcacctcagtttttcg-cagGACGTTGGTCAATATGGATATAAAGCTCGACTTTGTTCCACCTTGGGTGATCAACTTCATCACACGGCAGCTCGTTGGCAGTGGCTACAAACTTTATCAA
upper sequence: GRMZM2G104449_T02 (Zea mays), 3'ss of exon 8
lower sequence: EFJ31074 (Selaginella moellendorffii), 3'ss of exon 7
atttttttaagtatttccttttttttcatgctagcattattcatttcgcagctt-tcaaaatatactgtattgatttttctttagttaaatcctctgtcagGGCAATAGCTAATATGGATATCAAGCTAGATTTTGTTCCACCATGGTTGATCAACTTCATGTCAAGGCAACTAATAGGCAGCGGGCATAAGCTGTATCAA
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----------------------------------------gtagtttgaagcttgtcgacgttctccgtgtt--tccagtttcacctcagtgtttcg-cagGACGTTGGTCAATATGGATATAAAGCTCGACTTTGTTCCACCTTGGGTGATCAACTTCATCACACGGCAGCTCGTTGGCAGTGGCTACAAACTTTATCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcgcagctttcaaaatatactgtattgatttttctttagttaaatcctctgtcagGGCAATAGCTAATATGGATATCAAGCTAGATTTTGTTCCACCATGGTTGATCAACTTCATGTCAAGGCAACTAATAGGCAGCGGGCATAAGCTGTATCAA
tattgat putative branch site (score: 3)
tcctctgtc putative PPT
aaaatatactgtattg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atttttttaagtatttccttttttttcatgctagcattattcatttcgcagctttcaaaatatactgtattgatttttctttagttaaatcctctgtcagGGCAATAGCTAATATGGATATCAAGCTAGATTTTGTTCCACCATGGTTGATCAACTTCATGTCAAGGCAACTAATAGGCAGCGGGCATAAGCTGTATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG