1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taggataacaaagttgcaaatctgagatgtttttaagtataaatatacttgtggtcatgttcctagttttttagtatgtttttgaattttctgtttacagATCTTGCTGCACGAATTTGGTTGAACATGGGTGATTATGGTTGTGAAGCGGAAGAATTGTAAAGTCGGTGGCTACAGTGCTGAGGCCATTGTAGGCTCAC
species | Zea mays |
transcript | GRMZM2G104254_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGAAGTGGTGATGTGTGGGACGAATCACTTGAGGCTCCATTCTGAATGGT ATCTTGCTGCACGAATTTGGTTGAACATGGGTGATTATGGTTGTGAAGCGGEST: gi|89251014|gb|DY622800.1|DY622800
genomic: GGAAGTGGTGATGTGTGGGACGAATCACTTGAGGCTCCATTCTGAATGGTgtaagtgtgt ... ctgtttacagATCTTGCTGCACGAATTTGGTTGAACATGGGTGATTATGGTTGTGAAGCGG
EST: CTTGAGGCTCCATTCTGAATGGT ATCTTGCTGCACGAATTTGGTTGAACATGGGTGATTATGGTTGTGAAGCGG
genomic: CTTGAGGCTCCATTCTGAATGGTgtaagtgtgt ... ctgtttacagATCTTGCTGCACGAATTTGGTTGAACATGGGTGATTATGGTTGTGAAGCGG
tacttgtggtcatgttcctagttttttagtatgtttttgaattttctgtttacagATCTTGCTGCACGAATTTGGTTGAACATGGGTGATTATGGTTGTGAAGCGGAAGAATTGTAAAGTCGGTGGCTACAGTGCTGAGGCCATTGTAGGCTCAC
ttttctgttt CT-rich tract
tagttttttagtatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggataacaaagttgcaaatctgagatgtttttaagtataaatatacttgtggtcatgttcctagttttttagtatgtttttgaattttctgtttacagATCTTGCTGCACGAATTTGGTTGAACATGGGTGATTATGGTTGTGAAGCGGAAGAATTGTAAAGTCGGTGGCTACAGTGCTGAGGCCATTGTAGGCTCAC
- - -taacaaa
- - - - - - gttgcaa
- - - - - - - - - - - - - -tgttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttttg