1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgccatggttcatgaatttttacacgccccttgagatgtttggtttgtcttttgagattttcttttcaaacagGTCCTGGACAATGTTTGTCCACACGGCGGTCAAAGCATGCTAGTCAGAATGCGTTTGCAATTGAAGTCGTGCCACTAAAATGTCAAGATTCTATAGATGA
species | Zea mays |
transcript | GRMZM2G104147_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATCCTATTTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGAGA GTCCTGGACAATGTTTGTCCACACGGCGGTCAAAGCATGCTAGTCAGAATGEST: gi|78104713|gb|DV523131.1|DV523131
genomic: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGAGAgtatgccatg ... tttcaaacagGTCCTGGACAATGTTTGTCCACACGGCGGTCAAAGCATGCTAGTCAGAATG
EST: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGAGA GTCCTGGACAATGTTTGTCCACACGGCGGTCAAAGCATGCTAGTCAGAATG
genomic: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGAGAgtatgccatg ... tttcaaacagGTCCTGGACAATGTTTGTCCACACGGCGGTCAAAGCATGCTAGTCAGAATG
tttacacgccccttgagatgtttggtttgtcttttgagattttcttttcaaacagGTCCTGGACAATGTTTGTCCACACGGCGGTCAAAGCATGCTAGTCAGAATGCGTTTGCAATTGAAGTCGTGCCACTAAAATGTCAAGATTCTATAGATGA
ttttcttttc CT-rich tract
attttcttttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccatggttcatgaatttttacacgccccttgagatgtttggtttgtcttttgagattttcttttcaaacagGTCCTGGACAATGTTTGTCCACACGGCGGTCAAAGCATGCTAGTCAGAATGCGTTTGCAATTGAAGTCGTGCCACTAAAATGTCAAGATTCTATAGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG