1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcatatttttgctaatgaattcccctagatatatgtccaattgctgtcattctaaggctacactaaacattttcaataatattccagACAACATTTTCACTTTGCAACAATGGTGTTCAACCACATTCCCAGAAGCAAAAGAACAACTGGAACATATGTACAGGGAG
species | Zea mays |
transcript | GRMZM2G102242_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGGATGCTACTGATATTGCTCATTCAGCAGCTAACAGGTGGACAG ACAACATTTTCACTTTGCAACAATGGTGTTCAACCACATTCCCAGAAGCAAEST: gi|78119445|gb|DV537829.1|DV537829
genomic: AGGATGCTACTGATATTGCTCATTCAGCAGCTAACAGGTGGACAGgtcatatttt ... aatattccagACAACATTTTCACTTTGCAACAATGGTGTTCAACCACATTCCCAGAAGCAA
EST: AGGATGCTACTGATATTGCTCATTCAGCAGCTAACAGGTGGACAG ACAACATTTTCACTTTGCAACAATGGTGTTCAACCCCATTCCCAGAAGCAA
genomic: AGGATGCTACTGATATTGCTCATTCAGCAGCTAACAGGTGGACAGgtcatatttt ... aatattccagACAACATTTTCACTTTGCAACAATGGTGTTCAACCACATTCCCAGAAGCAA
atgtccaattgctgtcattctaaggctacactaaacattttcaataatattccagACAACATTTTCACTTTGCAACAATGGTGTTCAACCACATTCCCAGAAGCAAAAGAACAACTGGAACATATGTACAGGGAG
cactaaa putative branch site (score: 120)
actaaacattttcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcatatttttgctaatgaattcccctagatatatgtccaattgctgtcattctaaggctacactaaacattttcaataatattccagACAACATTTTCACTTTGCAACAATGGTGTTCAACCACATTCCCAGAAGCAAAAGAACAACTGGAACATATGTACAGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC