1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aaagaaaattccacgatgcctattgagtcttgacctgtgttttggccttttatcacaaacattggttaattacttaattatggcattcatgtacatgcagATAGATACCAAAGATATTCTTTTTATATGTGGTGGCGCTTTCGTGGATTTGGAGAAAACTATATCGGAGAG
species | Zea mays |
transcript | GRMZM2G101791_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACGTTCCTGAAAAAGGAGCAAGGAAGCATCCTCGTGGTGATAATATACAG ATAGATACCAAAGATATTCTTTTTATATGTGEST: gi|87156336|gb|DY401125.1|DY401125
genomic: ACGTTCCTGAAAAAGGAGCAAGGAAGCATCCTCGTGGTGATAATATACAGgtaaagctag ... gtacatgcagATAGATACCAAAGATATTCTTTTTATATGTG
EST: ACGTTCCTGAAAAAGGAGCAAGGAAGCATCCTCGTGGTGATAATATACAG ATAGATACCAAAGATATTCTTTTTATATGTGGTGGCGCTTTCGTGGATTTG
genomic: ACGTTCCTGAAAAAGGAGCAAGGAAGCATCCTCGTGGTGATAATATACAGgtaaagctag ... gtacatgcagATAGATACCAAAGATATTCTTTTTATATGTGGTGGCGCTTTCGTGGATTTG
ccttttatcacaaacattggttaattacttaattatggcattcatgtacatgcagATAGATACCAAAGATATTCTTTTTATATGTGGTGGCGCTTTCGTGGATTTGGAGAAAACTATATCGGAGAG
acttaat putative branch site (score: 81)
attggttaattactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagaaaattccacgatgcctattgagtcttgacctgtgttttggccttttatcacaaacattggttaattacttaattatggcattcatgtacatgcagATAGATACCAAAGATATTCTTTTTATATGTGGTGGCGCTTTCGTGGATTTGGAGAAAACTATATCGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA