1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttattatgttaatttgttgctccgaacagtttatctattctcccttattattttctaatatgctatgttttgctcatccactctccatcaaatgtgtagGCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAATGTACTATTTCAAACACGGAATCAATTGAGCTGGGATACCTTTTCACGG
species | Zea mays |
transcript | GRMZM2G101181_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTTGTTACGAATAATAATGGGAACATGGCCAAAGTTTTAGCTGGACGGAG GGGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAAEST: gi|5713681|gb|AI943673.1|AI943673
genomic: TTTGTTACGAATAATAATGGGAACATGGCCAAAGTTTTAGCTGGACGGAGgtatgtaccc ... aaatgtgtagGCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAA
EST: TTTGTTACGAATAATAATGGGAACATGGCCAAAGTTTTAGCTGGACGGAG GCGATACATGGGCCCCAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAAEST: gi|78025385|gb|DV493772.1|DV493772
genomic: TTTGTTACGAATAATAATGGGAACATGGCCAAAGTTTTAGCTGGACGGAGgtatgtaccc ... aaatgtgtagGCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAA
EST: TTTGTTACGAATAATAATGGGAACATGGCCAAAGTTTTAGCTGGACGGAG GCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAAEST: gi|148935746|gb|EC879790.2|EC879790
genomic: TTTGTTACGAATAATAATGGGAACATGGCCAAAGTTTTAGCTGGACGGAGgtatgtaccc ... aaatgtgtagGCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAA
EST: TTTGTTACGAATAATAATGGGAACATGGCCAAAGTTTTAGCTGGACGGAG GCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAA
genomic: TTTGTTACGAATAATAATGGGAACATGGCCAAAGTTTTAGCTGGACGGAGgtatgtaccc ... aaatgtgtagGCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAA
ttattattttctaatatgctatgttttgctcatccactctccatcaaatgtgtagGCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAATGTACTATTTCAAACACGGAATCAATTGAGCTGGGATACCTTTTCACGG
ttctaat putative branch site (score: 2)
attttctaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattatgttaatttgttgctccgaacagtttatctattctcccttattattttctaatatgctatgttttgctcatccactctccatcaaatgtgtagGCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAATGTACTATTTCAAACACGGAATCAATTGAGCTGGGATACCTTTTCACGG
- - ttatgtt
- - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccatc