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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttattatgttaatttgttgctccgaacagtttatctattctcccttattattttctaatatgctatgttttgctcatccactctccatcaaatgtgtagGCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAATGTACTATTTCAAACACGGAATCAATTGAGCTGGGATACCTTTTCACGG

Basic information

species Zea mays
transcript GRMZM2G101181_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101181_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os04g46570.1 (Oryza sativa), 3'ss of exon 8
tttattatgttaatttgttgctccgaacagtttatctattctcccttattattttctaatatgctatgttt--tgctcatccactctccatcaaatgtgtagGCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAATGTACTATTTCAAACACGGAATCAATTGAGCTGGGATACCTTTTCACGG
  || |        |      |    |    || |   |       |||  ||      | || |   | |  || |||| || ||||  || | | ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||  |||||||| | | |||||| ||  || | |||||||  ||||||| |
cctagtgctacgtgtgaccctttttcatgtatttttcgtatgtgtctatcgttggtggttttgtttcatctaatggtcattca-tctctgtctact-tgtagGCGATACATGGGCCACAAGAGAACCATTCGCCCAAATGCTAAAAAACTCAACTTACTATTTAAGAGACGGAAACAGATGGGATGGGATATATTTTCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76282455|gb|DV022023.1|DV022023
EST:     TTTGTTACGAATAATAATGGGAACATGGCCAAAGTTTTAGCTGGACGGAG                         GGGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAA
genomic: TTTGTTACGAATAATAATGGGAACATGGCCAAAGTTTTAGCTGGACGGAGgtatgtaccc ... aaatgtgtagGCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAA
EST: gi|5713681|gb|AI943673.1|AI943673
EST:     TTTGTTACGAATAATAATGGGAACATGGCCAAAGTTTTAGCTGGACGGAG                         GCGATACATGGGCCCCAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAA
genomic: TTTGTTACGAATAATAATGGGAACATGGCCAAAGTTTTAGCTGGACGGAGgtatgtaccc ... aaatgtgtagGCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAA
EST: gi|78025385|gb|DV493772.1|DV493772
EST:     TTTGTTACGAATAATAATGGGAACATGGCCAAAGTTTTAGCTGGACGGAG                         GCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAA
genomic: TTTGTTACGAATAATAATGGGAACATGGCCAAAGTTTTAGCTGGACGGAGgtatgtaccc ... aaatgtgtagGCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAA
EST: gi|148935746|gb|EC879790.2|EC879790
EST:     TTTGTTACGAATAATAATGGGAACATGGCCAAAGTTTTAGCTGGACGGAG                         GCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAA
genomic: TTTGTTACGAATAATAATGGGAACATGGCCAAAGTTTTAGCTGGACGGAGgtatgtaccc ... aaatgtgtagGCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattattttctaatatgctatgttttgctcatccactctccatcaaatgtgtagGCGATACATGGGCCACAAGAGAACTATTCGCCCAAATGCAAAGAAACTCAATGTACTATTTCAAACACGGAATCAATTGAGCTGGGATACCTTTTCACGG
        ttctaat  putative branch site (score: 2)
     attttctaatat  TA-rich tract