1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcagctgcattgctatgctaccaagaagtgaattagcgggggaagatttgtaaaaaaggatctgtggttctgtttttgtgtgcagAGCTGAGCTCGAGCAGATGTTCTCAGGTATGCCGGTGGTGTTCACGGGCACGTTGCAAGGGGAGGAGCTATCACAGGCCTATGCCAGTGGGGATGTGTTT
species | Zea mays |
transcript | GRMZM2G100652_T04 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACCATTCAG AGCTGAGCTCGAGCAGATGTTCTCAGGTATGCCGGTGGTGTTCACGGGCACEST: gi|211491629|gb|FL429938.1|FL429938
genomic: GACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACCATTCAGgtcagctgca ... ttgtgtgcagAGCTGAGCTCGAGCAGATGTTCTCAGGTATGCCGGTGGTGTTCACGGGCAC
EST: GACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACCATTCAG AGCTGAGCTCGAGCAGATGTTCTCAGGTATGCCGGTGGTGTTCACGGGCACEST: gi|211368674|gb|FL393824.1|FL393824
genomic: GACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACCATTCAGgtcagctgca ... ttgtgtgcagAGCTGAGCTCGAGCAGATGTTCTCAGGTATGCCGGTGGTGTTCACGGGCAC
EST: GACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACCATTCAG AGCTGAGCTCGAGCAGATGTTCTCAGGTATGCCGGTGGTGTTCACGGGCAC
genomic: GACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACCATTCAGgtcagctgca ... ttgtgtgcagAGCTGAGCTCGAGCAGATGTTCTCAGGTATGCCGGTGGTGTTCACGGGCAC
aattagcgggggaagatttgtaaaaaaggatctgtggttctgtttttgtgtgcagAGCTGAGCTCGAGCAGATGTTCTCAGGTATGCCGGTGGTGTTCACGGGCACGTTGCAAGGGGAGGAGCTATCACAGGCCTATGCCAGTGGGGATGTGTTT
ttctgttttt CT-rich tract
aagatttgtaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagctgcattgctatgctaccaagaagtgaattagcgggggaagatttgtaaaaaaggatctgtggttctgtttttgtgtgcagAGCTGAGCTCGAGCAGATGTTCTCAGGTATGCCGGTGGTGTTCACGGGCACGTTGCAAGGGGAGGAGCTATCACAGGCCTATGCCAGTGGGGATGTGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT