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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acgttttgctgaagagaaatttaaatatttgcatgtactctgtgttaagcaagctaaacatgttctcacccttttcttctcaaatatgtgatacatccagGGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACTGTTTCTGT

Basic information

species Zea mays
transcript GRMZM2G100484_T03
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100484_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os09g15170.1 (Oryza sativa), 3'ss of exon 9
---------------------------------------------------------------------------------------acgttttgct----gaagagaaatttaaatatttgcatgtactctgtgttaagcaagctaaacatgttctcacccttttcttctcaaatatgtgatacatccagGGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACTGTTTCTGT
                                                                                       |  ||||| |    | | |||||| ||||| |||| ||| |   |      ||  |  |||||    | | | | |||||| ||| ||||||| |    | ||||| || || ||| |||||||||| || ||||||||||| ||||| ||||||||||||||
gttagtggtcttctcataggttgattcatgaatcttaacttggaatacccactaaattagttacatgttcataaacatttaagaaccaaattttgtttctggtaaagaaatgtaaatttttggatggataattctgctagtga--taaactcccttttaac-ttttctgctcgaatatgtcaatttttcagGGAATCGGTACCTTACTAGATGGTCTATTTGGCACTGGTACTGGATCTACTGTTTCTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9566278|gb|BE475787.1|BE475787
EST:     GTGCGACACCCCCACCAGCATATGTCCTGAGCAGAGGCATTGGGTGGCAG                         GGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACT
genomic: GTGCGACACCCCCACCAGCATATGTCCTGAGCAGAGGCATTGGGTGGCAGgttagtgatg ... atacatccagGGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACT
EST: gi|22545627|gb|BU097986.1|BU097986
EST:     GTGCGACACCCCCACCAGCATATGTCCTGAGCAGAGGCATTGGGTGGCAG                         GGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACT
genomic: GTGCGACACCCCCACCAGCATATGTCCTGAGCAGAGGCATTGGGTGGCAGgttagtgatg ... atacatccagGGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACT
EST: gi|26457048|gb|CA828631.1|CA828631
EST:     GTGCGACACCCCCACCAGCATATGTCCTGAGCAGAGGCATTGGGTGGCAG                         GGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACT
genomic: GTGCGACACCCCCACCAGCATATGTCCTGAGCAGAGGCATTGGGTGGCAGgttagtgatg ... atacatccagGGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACT
EST: gi|211271038|gb|FL034395.1|FL034395
EST:     GAGCAGAGGCATTGGGTGGCAG                         GGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACT
genomic: GAGCAGAGGCATTGGGTGGCAGgttagtgatg ... atacatccagGGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagcaagctaaacatgttctcacccttttcttctcaaatatgtgatacatccagGGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACTGTTTCTGT
                 ttctcac  putative branch site (score: 2)
                                  tcaaatat  TA-rich tract