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gtaccatgatatacttactaaaaataaacatagaaattttcgaagaggtttatatatcatgccttgtagcaattttttggttttcattatttaggattattttcgatccatctaattctgtgaacaatatttgagggttgcagACCACGGGAGCATTCAAAGCTGCTGCACGATTGGCTAGTGCGACACCCCCACCAGCATATGTCCTGAGCAGAGGCATTGGGTGGCAG
species | Zea mays |
transcript | GRMZM2G100484_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGACCATGCATTTGGTATGATGGCAGCGGTGATGGTTTCTTTAATAGAG ACCACGGGAGCATTCAAAGCTGCTGCACGATTGGCTAGTGCGACACCCCCAEST: gi|22545627|gb|BU097986.1|BU097986
genomic: CAGACCATGCATTTGGTATGATGGCAGCGGTGATGGTTTCTTTAATAGAGgtaccatgat ... agggttgcagACCACGGGAGCATTCAAAGCTGCTGCACGATTGGCTAGTGCGACACCCCCA
EST: CAGACCATGCATTTGGTATGATGGCAGCGGTGATGGTTTCTTTAATAGAG ACCACGGGAGCATTCAAAGCTGCTGCACGATTGGCTAGTGCGACACCCCCAEST: gi|26457048|gb|CA828631.1|CA828631
genomic: CAGACCATGCATTTGGTATGATGGCAGCGGTGATGGTTTCTTTAATAGAGgtaccatgat ... agggttgcagACCACGGGAGCATTCAAAGCTGCTGCACGATTGGCTAGTGCGACACCCCCA
EST: CAGACCATGCATTTGGTATGATGGCAGCGGTGATGGTTTCTTTAATAGAG ACCACGGGAGCATTCAAAGCTGCTGCACGATTGGCTAGTGCGACACCCCCA
genomic: CAGACCATGCATTTGGTATGATGGCAGCGGTGATGGTTTCTTTAATAGAGgtaccatgat ... agggttgcagACCACGGGAGCATTCAAAGCTGCTGCACGATTGGCTAGTGCGACACCCCCA
atttaggattattttcgatccatctaattctgtgaacaatatttgagggttgcagACCACGGGAGCATTCAAAGCTGCTGCACGATTGGCTAGTGCGACACCCCCACCAGCATATGTCCTGAGCAGAGGCATTGGGTGGCAG
atctaat putative branch site (score: 32)
aacaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccatgatatacttactaaaaataaacatagaaattttcgaagaggtttatatatcatgccttgtagcaattttttggttttcattatttaggattattttcgatccatctaattctgtgaacaatatttgagggttgcagACCACGGGAGCATTCAAAGCTGCTGCACGATTGGCTAGTGCGACACCCCCACCAGCATATGTCCTGAGCAGAGGCATTGGGTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG