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gttagatgtttgcacattctctttctactatatagaataagtgctattgttggaccaatcgcgaccaaggccctgttttcttgaacttgatctcatcagtatttattcttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCTCTTGAGCGTGCTGCTGAGAACCAAAAGAGCATTCTGTTT
species | Zea mays |
transcript | GRMZM2G098569_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCTEST: gi|9953883|gb|BE640466.1|BE640466
genomic: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAGgttagatgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCT
EST: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCTEST: gi|76293423|gb|DV032991.1|DV032991
genomic: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAGgttagatgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCT
EST: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCTEST: gi|78117581|gb|DV535968.1|DV535968
genomic: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAGgttagatgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCT
EST: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCTEST: gi|149100778|gb|EE186872.2|EE186872
genomic: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAGgttagatgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCT
EST: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCTEST: gi|9028732|gb|BE238772.1|BE238772
genomic: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAGgttagatgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCT
EST: TTCAGGATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCTEST: gi|60339232|gb|DN206205.1|DN206205
genomic: TTCAGGATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAGgttagatgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCT
EST: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCTEST: gi|60359240|gb|DN226213.1|DN226213
genomic: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAGgttagatgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCT
EST: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCTEST: gi|60355012|gb|DN221985.1|DN221985
genomic: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAGgttagatgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCT
EST: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCTEST: gi|148951737|gb|EC897492.2|EC897492
genomic: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAGgttagatgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCT
EST: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCTEST: gi|60341646|gb|DN208619.1|DN208619
genomic: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAGgttagatgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCT
EST: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCTEST: gi|148964885|gb|EE015747.2|EE015747
genomic: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAGgttagatgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCT
EST: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCTEST: gi|71310909|gb|DR791757.1|DR791757
genomic: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAGgttagatgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCT
EST: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCTEST: gi|101397216|gb|EB820532.1|EB820532
genomic: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAGgttagatgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCT
EST: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCTEST: gi|60353036|gb|DN220009.1|DN220009
genomic: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAGgttagatgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCT
EST: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAG ATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCT
genomic: GATGACTATCTAGATTGTTTTGGTGATCCTGAATTCATTGGCAAGgttagatgtt ... cttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCT
gaccaaggccctgttttcttgaacttgatctcatcagtatttattcttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCTCTTGAGCGTGCTGCTGAGAACCAAAAGAGCATTCTGTTT
acttgat putative branch site (score: 126)
tttattctt putative PPT
agtatttattcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagatgtttgcacattctctttctactatatagaataagtgctattgttggaccaatcgcgaccaaggccctgttttcttgaacttgatctcatcagtatttattcttatcacagATCGGAACTGACATTGAAGACTACAAATGTTCCTGGCTAGTTGTGCAAGCTCTTGAGCGTGCTGCTGAGAACCAAAAGAGCATTCTGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA