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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcaacatatttttcatgtcgttcagtcaacttttggggtgacatttatcacatttcttcagtgcatagtcttatcacaattattgtcctccatgtgggaattgcatttgttcgaaaagctgaaatggtgtctttggctctctgttttcagAGTTTTTCCAGAATAAGTTAGTAGAGACTATCCAGTTCATGGAAATTCTTAATTTGAAAGACACCTTTGAGAAAGACAGCTTTTTCCGGAAGCTTCCCAA

Basic information

species Zea mays
transcript GRMZM2G098078_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G098078_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g60440.1 (Oryza sativa), 3'ss of exon 8
gtaagctcaacatatttttcat--gtcgttc----agtcaacttttggggt--gacatttatcacatt-----tcttcagtgcatagtcttatcacaattattgtc-ctccatgtggg--aattgcatttgttcgaa-aagctgaaatggtgtctttggctctctgttttcagAGTTTTTCCAGAATAAGTTAGTAGAGACTATCCAGTTCATGGAAATTCTTAATTTGAAAGACACCTTTGAGAAAGACAGCTTTTTCCGGAAGCTTCCCAA
||||| ||||||||||||||     || ||     | | |  |||||   |  |||| |||| ||||       | | |     || | ||      | |  |||   || ||||     | ||| |||  ||  || |||||| | ||     | ||| |||   |||||||||||||||||||| |||||||||||||| || |||||||||||| ||||||| || || ||||   |||||||||| ||||||||||| || || || ||
gtaagttcaacatatttttctctcatcatttcaggaattactttttgtatttcgacacttattacatcgacgcccataaccttctacttttgctcttaatgctgtaattctatgtcaattatttggattactttaaataagctgcagtgacaattgtggttcttcattttcagAGTTTTTCCAGAACAAGTTAGTAGAGACCATACAGTTCATGGAAGTTCTTAACTTAAAGGACAGTGTTGAGAAAGATAGCTTTTTCCGTAAACTACCGAA

upper sequence: GRMZM2G098078_T02 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA20G36180.1 (Glycine max), 3'ss of exon 8
gtaagctcaacatatttttcatgtcgttcagtcaacttttggggtgacatttatcacatttcttcagtgcatagtcttatcacaattattgtcctccatgtgggaattgcatttgttcgaaaagctgaaatggtgtctttggctctctgttttcagAGTTTTTCCAGAATAAGTTAGTAGAGACTATCCAGTTCATGGAAATTCTTAATTTGAAAGACACCTTTGAGAAAGACAGCTTTTTCCGGAAGCTTCCCAA
                                  |||||||     | | ||||||  ||  || ||| |  |  || ||   | |   ||   ||| |        || |||| ||             ||   |  |  |   |   | | |||||| ||| || |||||||| ||||| || || || |||||||||||||||| ||||||||| |   |||||||||||| ||| ||||| |||||||| ||
----------------------------------acttttg-----atagttatcat-ttgttttagtcctgatcctgatataagtctctgcaatcctttcca----tgaatttattt------------tgagtttgtcagtaatacatgtgcagAGTATTTTCAAAATAAGTTGGTAGACACAATACATTTCATGGAAATTCTTAGTTTGAAAGATAGTGTTGAGAAAGACACCTTCTTCCGCAAGCTTCCAAA

upper sequence: GRMZM2G098078_T02 (Zea mays), 3'ss of exon 8
lower sequence: Vv13s0067g03110.t01 (Vitis vinifera), 3'ss of exon 8
gtaagctcaacatatttttcatgtcgttcagtcaacttttggggtgacatttatcacatttcttcagtgcatagtcttatcaca-attattgtcctccatgtgggaattgcatttgttcgaaaagctgaaatggtgtctttggctctctgttttcagAGTTTTTCCAGAATAAGTTAGTAGAGACTATCCAGTTCATGGAAATTCTTAATTTGAAAGACACCTTTGAGAAAGACAGCTTTTTCCGGAAGCTTCCCAA
                                                         |||||||     ||   ||||    |  | ||||  | ||  | |     || | ||| ||           | |  | ||    | | |   ||  |||| | |||||| ||||||||||| || ||||| || |||||||| |||||||||||||| ||||   |||| || || | ||| ||||| |||||||| ||
---------------------------------------------------------atttctttgcctcagtctctttcttcttagtattcccttctttcttccttttcctttttttttttggtgcctactaatttcagaagatatgcattggcagAATATTTCCAAAATAAGTTAGTGGATACTATACATTTCATGGACATTCTTAATTTGAAGGACAGTGTTGAAAAGGATACCTTCTTCCGTAAGCTTCCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggaattgcatttgttcgaaaagctgaaatggtgtctttggctctctgttttcagAGTTTTTCCAGAATAAGTTAGTAGAGACTATCCAGTTCATGGAAATTCTTAATTTGAAAGACACCTTTGAGAAAGACAGCTTTTTCCGGAAGCTTCCCAA
                                         ctctctgttttc  CT-rich tract
         atttgtt  TA-rich tract