Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccacatactcttctagagatcttatcgaactatatcgttattagaagataacttggtgaacattgtacatcaaccatattcattgcaataagtctccaacttcagttttttcacaatattttaataaggattggtcaattggtagGTTTCTCGATCATGTGCAATGCCTCCAAATGCAAGGGATACATTATATCATAGCTTACCACCTACCATCAAATCTGCTTTCCGTTCTAAGCTACAATCTT

Basic information

species Zea mays
transcript GRMZM2G097502_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G097502_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 3'ss of exon 9
gtaagtccacatactcttctagagatcttatcgaactatatcgttattagaagataacttggtgaacattgtacatcaaccatattcattg-caataagtctccaacttcagttttttcacaatattttaataaggattggtcaattggtagGTTTCTCGATCATGTGCAATGCCTCCAAATGCAAGGGATACATTATATCATAGCTTACCACCTACCATCAAATCTGCTTTCCGTTCTAAGCTACAATCTT
                                                       || |||    |  |   |  |||||||| |  |    |   | ||    |    | |||     ||||||| ||||  ||||||| |||| ||| |||||||||||||| ||   || ||||| | | ||||||||||| |||| ||  | || ||||  || |||||||| ||| ||||||| ||||||||||| |
---------------------------------------------------tagcaatttgcaatatttca-atctcaaccatgtataccaacttcatgtggttattgcctgttggcaaacaatatcttaacgaggattgatcaactggcagGTTTCTCGATCAAGTTTGATCCCTCCCACTACAAGGGATACACTATACCAAGGTTTGCCACTGACTATCAAATCAGCTCTCCGTTCGAAGCTACAATCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78090767|gb|DV519141.1|DV519141
EST:     CAGGCCTTGCATTGCATTATGCTAATATCATCAATCAGATTGACAATCTT                         GTTTCTCGATCATGTGCAATGCCTCCAAATGCAAGGGATACCTTATATCAT
genomic: CAGGCCTTGCATTGCATTATGCTAATATCATCAATCAGATTGACAATCTTgtaagtccac ... caattggtagGTTTCTCGATCATGTGCAATGCCTCCAAATGCAAGGGATACATTATATCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtctccaacttcagttttttcacaatattttaataaggattggtcaattggtagGTTTCTCGATCATGTGCAATGCCTCCAAATGCAAGGGATACATTATATCATAGCTTACCACCTACCATCAAATCTGCTTTCCGTTCTAAGCTACAATCTT
                            ttttaat  putative branch site (score: 3)
          ttcagttttttcacaa  TA-rich tract