1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttgatgggtacatgtgaaatctttttggcttattgaatctgaatctcgtatcaaaagcgatacagtggtaactaactgttttttcttttacaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGAAACAGGAGGAAAGCTGAAAGAGGATGATTTACTCTCTGGCAATTTCAT
species | Zea mays |
transcript | GRMZM2G097421_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|101399468|gb|EB821606.1|EB821606
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|74244189|gb|DT652103.1|DT652103
genomic: TCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|149012853|gb|EE042695.2|EE042695
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|148947644|gb|EC893124.2|EC893124
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTGCTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|86468982|gb|DY235352.1|DY235352
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|149101363|gb|EE187480.2|EE187480
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|78118378|gb|DV536764.1|DV536764
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|60349889|gb|DN216862.1|DN216862
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|94478877|gb|EB707835.1|EB707835
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|78123628|gb|DV542012.1|DV542012
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|32939450|gb|CF044269.1|CF044269
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: GTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|94477225|gb|EB706183.1|EB706183
genomic: GTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|44901394|gb|CK827939.1|CK827939
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|211394132|gb|FL452937.1|FL452937
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|86471099|gb|DY237469.1|DY237469
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|78079715|gb|DV508127.1|DV508127
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGACCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|32940656|gb|CF045475.1|CF045475
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: ACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|148948890|gb|EC894304.2|EC894304
genomic: ACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|149005297|gb|EE039846.2|EE039846
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|211094620|gb|FL143748.1|FL143748
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|71416855|gb|DR803833.1|DR803833
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|148951156|gb|EC896835.2|EC896835
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|149070088|gb|EE158488.2|EE158488
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGEST: gi|101394369|gb|EB819119.1|EB819119
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
EST: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAG ATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
genomic: TACTGTTGTACTGCATTCTACAAGAGAACATGATCCAACCCTTACTTCAGgtaaatgctt ... acaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTG
ctcgtatcaaaagcgatacagtggtaactaactgttttttcttttacaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGAAACAGGAGGAAAGCTGAAAGAGGATGATTTACTCTCTGGCAATTTCAT
aactaac putative branch site (score: 50)
ctgttttttcttttac CT-rich tract
ttttttcttttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgatgggtacatgtgaaatctttttggcttattgaatctgaatctcgtatcaaaagcgatacagtggtaactaactgttttttcttttacaactacagATCTGTATGCTCCTCTTTCCCCAATATATTGGCATATCCAAGGTAACGGTGAAACAGGAGGAAAGCTGAAAGAGGATGATTTACTCTCTGGCAATTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG