1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaacttcagtctcagcagatatttgatatgttgccatcacttgatttaagttaatggattcttattaacaatccagGAGCAAGCCTTAATGAAGAAGTTTCCACTAAAACAATTGCATCATTGGTTAAG
species | Zea mays |
transcript | GRMZM2G097277_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTCCCCAGTTTGGGTGGTGAATGATG GAGCAAGCCTTAATGAAGAAGTTNCCACTAAAACAATTGCATCATTGGTTAEST: gi|67026679|gb|CO455428.1|CO455428
genomic: CTTCCCCAGTTTGGGTGGTGAATGATGgtaacttcag ... aacaatccagGAGCAAGCCTTAATGAAGAAGTTTCCACTAAAACAATTGCATCATTGGTTA
EST: TTGGCTGAAGACCTTGGGGCTTCCCCATTTTGGGTGGTGAATGATG GAGCAAGCCTTAATGAAGAAGTTTCCACTAAAACAATTGCATCATTGGTTAEST: gi|71757747|gb|DR955684.1|DR955684
genomic: TTGGCTGAAGACCTTGGGGCTTCCCCAGTTTGGGTGGTGAATGATGgtaacttcag ... aacaatccagGAGCAAGCCTTAATGAAGAAGTTTCCACTAAAACAATTGCATCATTGGTTA
EST: TTGGCTGAAGACCTTGGGGCTTCCCCAGTTTGGGTGGTGAATGATG GAGCAAGCCTTAATGAAGAAGTTTCCACTAAAACAATTGCATCATTGGTTAEST: gi|5895641|gb|AW036887.1|AW036887
genomic: TTGGCTGAAGACCTTGGGGCTTCCCCAGTTTGGGTGGTGAATGATGgtaacttcag ... aacaatccagGAGCAAGCCTTAATGAAGAAGTTTCCACTAAAACAATTGCATCATTGGTTA
EST: TTGGCTGAAGACCTTGGGGCTTCCCCAGTTTGGGTGGTGAATGATG GAGCAAGCCTTAATGAAGAAGTTTCCACTAAAACAATTGCATCATTGGTTAEST: gi|67042721|gb|CO468976.1|CO468976
genomic: TTGGCTGAAGACCTTGGGGCTTCCCCAGTTTGGGTGGTGAATGATGgtaacttcag ... aacaatccagGAGCAAGCCTTAATGAAGAAGTTTCCACTAAAACAATTGCATCATTGGTTA
EST: TTGGCTGAAGACCTTGGGGCTTCCCCAGTTTGGGTGGTGAATGATG GAGCAAGCCTTAATGAAGAAGTTTCCACTAAAACAATTGCATCATTGGTTA
genomic: TTGGCTGAAGACCTTGGGGCTTCCCCAGTTTGGGTGGTGAATGATGgtaacttcag ... aacaatccagGAGCAAGCCTTAATGAAGAAGTTTCCACTAAAACAATTGCATCATTGGTTA
tttgatatgttgccatcacttgatttaagttaatggattcttattaacaatccagGAGCAAGCCTTAATGAAGAAGTTTCCACTAAAACAATTGCATCATTGGTTAAG
tattaac putative branch site (score: 118)
ttgatttaagttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttcagtctcagcagatatttgatatgttgccatcacttgatttaagttaatggattcttattaacaatccagGAGCAAGCCTTAATGAAGAAGTTTCCACTAAAACAATTGCATCATTGGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT