Sequence
atgc intronic sequence ATGC exonic sequence...atatcctatactggttgagtccgagtgctgcttgtgttactctttataatttcataatcctaaggtgttctttgttttatactttgaactatttttgtagACTTGAGAACACACTAAACTATGGCCTTGAGAGAGTCTGGGCTGTTGGATACATGAAGGGATCAAGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G095348_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 3'ss of exon 8
----atatcctatactggttg--agtccgagtgctgcttgtgttactctttataatt-tcataatcctaaggtgttctttgttttatactttgaactatttttgtagACTTGAGAACACACTAAACTATGGCCTTGAGAGAGTCTGGGCTGTTGGATACATGAAGGGATCAAGAAG
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tggaatatttgttagttgttggcagctcactacttaatacttatgtcagttatgattgccacaatgttgaggtgttctt-attttttaattta------ttttgtagACTTGAGAACACGCTAAACTATGGTCTTGAACGAGTCTGGGCTGTTGGATACATGAAGGGTTCAAGAAG
upper sequence: GRMZM2G095348_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 8
--atatcctatactggttgagtccgagtgctgcttgtgttactctttataatttcataatcctaaggtgttctttgttttatactt-tgaactatttttgtagACTTGAGAACACACTAAACTATGGCCTTGAGAGAGTCTGGGCTGTTGGATACATGAAGGGATCAAGAAG
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ttacatgtttttaagatttcaccaaaat-tagtttgaaattgagattatggat--atattccagtcatctttaaatttttatggtggtgcaatctgcttgcagGCTTGAGAACACATTGAACTATGGTCTTGAAAGAGTTTGGGCTATTGGATATCTGAAGGGTTCACGCCG
upper sequence: GRMZM2G095348_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA08G22140.1 (Glycine max), 3'ss of exon 8
atatcctatactggttgagtccgagtgctgcttgtgttactctttataatttc-ataatcctaaggtgttctttgttttatactt-tgaactatttttgtagACTTGAGAACACACTAAACTATGGCCTTGAGAGAGTCTGGGCTGTTGGATACATGAAGGGATCAAGAAG
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-tttttcataacatttctccttgaattat-tttgaaatatatctgagattatggatatatctgtcatttttaaatttttatggttgtgtaatatgcttgcagGCTTGAGAACACATTGAACTATAGTCTTGAAAGAGTTTGGGCTATTGGATACCTGAAGGGTTCACGTCG
upper sequence: GRMZM2G095348_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 8
atatcctatactggttga--gtccgagtgctgcttgtgttactctttataatttcataatcctaaggtgttctttgttttatactttgaactatttttgtagACTTGAGAACACACTAAACTATGGCCTTGAGAGAGTCTGGGCTGTTGGATACATGAAGGGATCAAGAAG
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ctattttatttccgtttacagtttttaagctgatactaaatgtagttggaagtatatt-ttggaagatatatactaattctccatttcaa-tgtatttgcagGCTTGAGAACACATTAAACTATGGTCTTGAAAGAGTCTGGGCTATTGGATACTTGAAGAGTTCTCGTCG
upper sequence: GRMZM2G095348_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 8
-atatcctatactggttgagtccgagtgctgcttgtgttactctttataatttcataatcctaaggtgttctttgttttatactttgaactatttttgtagACTTGAGAACACACTAAACTATGGCCTTGAGAGAGTCTGGGCTGTTGGATACATGAAGGGATCAAGAAG
|| | | | || | | | | | | || |||| ||| | ||| | | | ||| ||| || | | | | ||| || |||||||||||| |||||||||| ||||| |||||||||||| |||||||| ||||| | || | |
tttacagtttttaagctgttactaaatttagttggaagtatactttgtaagat-atatactaattctccattttaatttttatggttcaatttgcttgcagGCTTGAGAACACATTAAACTATGGTCTTGAAAGAGTCTGGGCTATTGGATACTTGAAGAGTTCTCGTCG
upper sequence: GRMZM2G095348_T02 (Zea mays), 3'ss of exon 7
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 3'ss of exon 8
------------------------------------------------------------------------atatc-ctatactggttgagtccgagtgctgcttgtgttactctttataatttc----ataatcctaaggtgt----tctttgttttatactttgaactattt-ttgtagACTTGAGAACACACTAAACTATGGCCTTGAGAGAGTCTGGGCTGTTGGATACATGAAGGGATCAAGAAG
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gtattataatattaaacagtttttttttgttggacatattatagtaaacgcttcttgtatgccttggctaaaccatctccactttggcttcattcttgtgc-actt-tttcaccattaccaatttcttttattgtccttccatttgtaatcccaatttcctaatgtctgttttttcttgcagGCTAGAGAACACATTGAATTATGGCCTTGAGAGAGTCTGGGCAATTGGTTACATTAAAAGTTCACGCCG
upper sequence: GRMZM2G095348_T02 (Zea mays), 3'ss of exon 7
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 12
--atatcctatactggttgagtccgag-tgctgcttgtgttactctttataatttc-----ataatcctaaggtgttcttt-----gttttatactttgaactatttttgtagACTTGAGAACACACTAAACTATGGCCTTGAGAGAGTCTGGGCTGTTGGATACATGAAGGGATCAAGAAG
| || ||| ||| || | ||| |||| | | || || | || ||| || | | || | ||| | ||||| ||||| ||| | ||| |||||||| ||| | ||||||||||||||||| || |||||| ||||| |||| || || ||| | |
gtaactcgtatgctgtctgcattggagctgctattgattttgtctttaaaaacttccttcaatttttcaaaaatcttcatccaacagttttttacttaatacttgacatctagGCTTGAGAATACATTGAACTATGGCCTTGAGAGGGTTTGGGCTATTGGACACATTAAAGGTTCACGCCG
upper sequence: GRMZM2G095348_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 8
atatcctatactggttgagtccgag-tgctgcttgtgttactctttataatttcataatcctaaggtgttctttgttttatactttgaactatttttgtagACTTGAGAACACACTAAACTATGGCCTTGAGAGAGTCTGGGCTGTTGGATACATGAAGGGATCAAGAAG
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-tgttttttcttaatgtagtgatagatgatagatgattaaacctttagagttatgctagtctttaatttccgacagactgaaccttcttcattaactacagGCTCGAGAACACGTTGAATTATGGTCTTGAAAGAGTTTGGGCTGTTGGATACATGAAAGGTTCACGCCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataatttcataatcctaaggtgttctttgttttatactttgaactatttttgtagACTTGAGAACACACTAAACTATGGCCTTGAGAGAGTCTGGGCTGTTGGATACATGAAGGGATCAAGAAG
ctattttt CT-rich tract
ttttatactttgaact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atatcctatactggttgagtccgagtgctgcttgtgttactctttataatttcataatcctaaggtgttctttgttttatactttgaactatttttgtagACTTGAGAACACACTAAACTATGGCCTTGAGAGAGTCTGGGCTGTTGGATACATGAAGGGATCAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG