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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactggcactgctattgacgcgctaggtctttccgcatccgtttgtttgttctaaccgtttgctgtgtctgccttgcccagGCTATGGATACTAATGGAGATGAGATGGCCAAGCCGCATGGGAAGAAGGGTGATCACAATTTTTTTTTTGGTAGGCGAGAAGAGTCGGGTCGAGGTAGTT

Basic information

species Zea mays
transcript GRMZM2G095252_T02
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211520114|gb|FL350150.1|FL350150
EST:     TATTAAGGAGCCAGAGTCTGCGCCCCTTGCTAACCCGATGGACAACTCTG                         GCTATGGATACTAATGGAGATGAGATGGCCAAGCCGCATGGGAAGAAGGGT
genomic: TATTAAGGAGCCAGAGTCTGCGCCCCTTGCTAACCCGATGGACAACTCTGgtaactggca ... ccttgcccagGCTATGGATACTAATGGAGATGAGATGGCCAAGCCGCATGGGAAGAAGGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctttccgcatccgtttgtttgttctaaccgtttgctgtgtctgccttgcccagGCTATGGATACTAATGGAGATGAGATGGCCAAGCCGCATGGGAAGAAGGGTGATCACAATTTTTTTTTTGGTAGGCGAGAAGAGTCGGGTCGAGGTAGTT
                       ttctaac  putative branch site (score: 1)
                                         tctgcctt  putative PPT
               tttgttt  TA-rich tract