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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtactgtacacatgatcagttgaacggcctgtacatgatcagatggattcgcgccttaacgctcatccggtccggtgctctggcgtgtgcagATCCGGACATGCTGGAGGTGGGCAACGGGGGCATGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAG

Basic information

species Zea mays
transcript GRMZM2G095126_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095126_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os10g35070.2 (Oryza sativa), 3'ss of exon 9
------------------gtctgtactgtacacatgatcagttgaa-cggcctgtacatgatcagatggattcgcgccttaacgctcatccggtccggtgctctggcgtgtg-cagATCCGGACATGCTGGAGGTGGGCAACGGGGGCATGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAG
                       || |      || ||||||| || |    | |  ||  ||| |||      |   ||       |    | |   |  | ||  || || |||| ||||||||||||||||| ||||| || || |||||||||  ||||||| |||| || |||||||||||||| |||||||||
gtcagtgaatcactgacgaatcatattac-tgtatcatcagttcaatccatgtctgaatt-tcaaatg---ctacagtttcgtctaaacttaggcatataatttgtggtttgtcagACCCGGACATGCTGGAGGTTGGCAATGGCGGGATGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAG

upper sequence: GRMZM2G095126_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os10g35070.4 (Oryza sativa), 3'ss of exon 10
------------------gtctgtactgtacacatgatcagttgaa-cggcctgtacatgatcagatggattcgcgccttaacgctcatccggtccggtgctctggcgtgtg-cagATCCGGACATGCTGGAGGTGGGCAACGGGGGCATGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAG-----------------
                       || |      || ||||||| || |    | |  ||  ||| |||      |   ||       |    | |   |  | ||  || || |||| ||||||||||||||||| ||||| || || |||||||||  ||||||| |||| || |||||||||||||| |||||||||                 
gtcagtgaatcactgacgaatcatattac-tgtatcatcagttcaatccatgtctgaatt-tcaaatg---ctacagtttcgtctaaacttaggcatataatttgtggtttgtcagACCCGGACATGCTGGAGGTTGGCAATGGCGGGATGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGGTACTACCAAATGTGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71323535|gb|DR798428.1|DR798428
EST:     GCGCGCCCCGGCGGATGGAACG                         ATCCGGACATGCTGGAGGTGGGCAACGGGGGCATGACCAACAGCGAGTACG
genomic: GCGCGCCCCGGCGGATGGAACGgtctgtactg ... gcgtgtgcagATCCGGACATGCTGGAGGTGGGCAACGGGGGCATGACCAACAGCGAGTACG
EST: gi|88753305|gb|DY537446.1|DY537446
EST:     CCAGAACGAGGTGTGGTGGGAGTACGCGCGCCCCGGCGGATGGAACG                         ATCCGGACATGCTGGAGGGGGGCAACGGGGGCAGGCCCAACAGCGAGTACG
genomic: CCAGAACGAGGTGTGGTCGGAGTACGCGCGCCCCGGCGGATGGAACGgtctgtactg ... gcgtgtgcagATCCGGACATGCTGGAGGTGGGCAACGGGGGCATGACCAACAGCGAGTACG
EST: gi|149080680|gb|EE169738.2|EE169738
EST:     GGACCAGAACGAGGTGTGGTCGGAGTACGCGCGCCCCGGCGGATGGAACG                         ATCCGGACATGCTGGAGGTGGGCAACGGGGGCATGACCAACAGCGAGTACG
genomic: GGACCAGAACGAGGTGTGGTCGGAGTACGCGCGCCCCGGCGGATGGAACGgtctgtactg ... gcgtgtgcagATCCGGACATGCTGGAGGTGGGCAACGGGGGCATGACCAACAGCGAGTACG
EST: gi|211321684|gb|FL295978.1|FL295978
EST:     GGACCAGAACGAGGTGTGGTCGGAGTACGCGCGCCCCGGCGGATGGAACG                         ATCCGGACATGCTGGAGGTGGGCAACGGGGGCATGACCAACAGCGAGTACG
genomic: GGACCAGAACGAGGTGTGGTCGGAGTACGCGCGCCCCGGCGGATGGAACGgtctgtactg ... gcgtgtgcagATCCGGACATGCTGGAGGTGGGCAACGGGGGCATGACCAACAGCGAGTACG
EST: gi|71767715|gb|DR965652.1|DR965652
EST:     GGACCAGAACGAGGTGTGGTCGGAGTACGCGCGCCCCGGCGGATGGAACG                         ATCCGGACATGCTGGAGGTGGGCAACGGGGGCATGACCAACAGCGAGTACG
genomic: GGACCAGAACGAGGTGTGGTCGGAGTACGCGCGCCCCGGCGGATGGAACGgtctgtactg ... gcgtgtgcagATCCGGACATGCTGGAGGTGGGCAACGGGGGCATGACCAACAGCGAGTACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcagatggattcgcgccttaacgctcatccggtccggtgctctggcgtgtgcagATCCGGACATGCTGGAGGTGGGCAACGGGGGCATGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAG
                ccttaac  putative branch site (score: 3)