Sequence
atgc intronic sequence ATGC exonic sequence...tcaaaattcagatgaaacgttgaagctgtgcatttttattgctatagcttgttttgtgataaatgctaatgaattgatcaatccttgtttaccaatgcagATCGGTCTTGACCAGATTGAAGCTCTGTATCAGTATGCCCAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATGGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G094083_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 2
tcaaaattcagatgaaacgttgaagctgtgcatttttattgctatagcttg--ttttgtgata--aatgctaatgaattgatcaatccttg--tttaccaatgcagATCGGTCTTGACCAGATTGAAGCTCTGTATCAGTATGCCCAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATGGTG
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---ctgttttagtgg--ttttaaaagaat-tattctacttttggaagtttgaattttgtggtatgagtcctgtctgactatgtaaacaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG
upper sequence: GRMZM2G094083_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA02G33770.1 (Glycine max), 3'ss of exon 2
--tcaaaattcagatgaaacgttgaagctgtgcatttttattgctatagcttgttttgtgataaatgctaatgaattgatcaatccttg--tttaccaatgcagATCGGTCTTGACCAGATTGAAGCTCTGTATCAGTATGCCCAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATGGTG
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tgctgtattttaga---ggttttaaaagaat-catcctagttttgagaagttgaattttgtggtatttgagttcactgtgtaaatgaggattctgctgtaacagATTGGTCCTGCACAGATCGAAGCATTGTACCAATATTCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAATACAGAG
upper sequence: GRMZM2G094083_T01 (Zea mays), 3'ss of exon 8
lower sequence: AT3G57290.1 (Arabidopsis thaliana), 3'ss of exon 2
-tcaaaattcagatga----aacgttgaagct-gtgcatttttatt--gctatagcttgttttgtgataaatgcta-atgaattgatcaatccttgtttaccaatgcagATCGGTCTTGACCAGATTGAAGCTCTGTATCAGTATGCCCAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATGGTG
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gttgtgatttggatgattaagttgtttaattttgtgaaatgttatccagatttggttttgtttgtgtattgtggaacacaaatcttatatggcttggtgtcttat-cagATTGGTCCAGACCAGATTGAGGCTTTGTACCAGTACGCCAAGTTTCAGTTTGAATGTGGCAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACAGGA
upper sequence: GRMZM2G094083_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 2
tcaaaattcagatgaaacgttgaagctgtgcatttttattgctatagcttgttttgtg-ataaatgctaatgaattg-atcaatccttgtttaccaatgcagATCGGTCTTGACCAGATTGAAGCTCTGTATCAGTATGCCCAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATGGTG
|| || | || ||| ||| || | | ||| || || || || || |||| ||| | || || | ||||| || | || ||||| || || | |||||||||||| ||||||||||||| ||||| |||||||| || |||||||||||||| || ||||| | |
tcctgtttttgttgttgtattgttgctaa--tttgacagaattctaggtttttgggtctatttggcttacaaaattatatcccttttttcttttctgaccagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG
upper sequence: GRMZM2G094083_T01 (Zea mays), 3'ss of exon 8
lower sequence: PP1S363_21V6.2 (Physcomitrella patens), 3'ss of exon 2
-tcaaaattcagatgaaacgttgaagctgtgcatttttattgctata-gcttgttttgtgataaatgctaatgaattgatcaatccttgtttaccaatgcagATCGGTCTTGACCAGATTGAAGCTCTGTATCAGTATGCCCAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATGGTG
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attgtaatatgtagcatatcgcatttcaacgtcttgctacctccgtgtggatgccacattataagtctgacagtttcgtctaaattgtgattgtt--tgtagATCGGTTCTGAGCAAATCGAGGCTCTGTATCAGTATGCCAAGTTCCAGTTTGAGTGCGGAAACTACTCGGGTGCATCCGACTACCTGTATGAGTATCGCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78083360|gb|DV511753.1|DV511753EST: TGGGTTATGATGGTGTTGTGGCACTGCTGGTTGCTGATATATCACTTTCA ATCGGTCTTGACCAGATTGAAGCTCTGTATCAGTATGCCCAATTTCAGTTT
genomic: TGGGTTATGATGGTGTTGTGGCACTGCTGGTTGCTGATATATCACTTTCAgttaagttac ... accaatgcagATCGGTCTTGACCAGATTGAAGCTCTGTATCAGTATGCCCAATTTCAGTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agcttgttttgtgataaatgctaatgaattgatcaatccttgtttaccaatgcagATCGGTCTTGACCAGATTGAAGCTCTGTATCAGTATGCCCAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATGGTG
taatgaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcaaaattcagatgaaacgttgaagctgtgcatttttattgctatagcttgttttgtgataaatgctaatgaattgatcaatccttgtttaccaatgcagATCGGTCTTGACCAGATTGAAGCTCTGTATCAGTATGCCCAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT